Homologs in group_2802

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5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_09155 FBDBKF_09155 100.0 Morganella morganii S1 hdc histidine decarboxylase
NLDBIP_10600 NLDBIP_10600 100.0 Morganella morganii S4 hdc histidine decarboxylase
LHKJJB_10755 LHKJJB_10755 100.0 Morganella morganii S3 hdc histidine decarboxylase
HKOGLL_13815 HKOGLL_13815 100.0 Morganella morganii S5 hdc histidine decarboxylase
F4V73_RS10795 F4V73_RS10795 95.0 Morganella psychrotolerans - histidine decarboxylase

Distribution of the homologs in the orthogroup group_2802

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2802

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P05034 0.0 786 99 0 378 1 hdc Histidine decarboxylase Morganella morganii
P28578 0.0 692 85 0 378 3 hdc Histidine decarboxylase Raoultella planticola
P28577 0.0 663 82 0 378 3 hdc Histidine decarboxylase Klebsiella aerogenes
Q1IAK7 0.0 619 76 0 372 3 hdc Histidine decarboxylase Pseudomonas entomophila (strain L48)
P95477 0.0 608 76 1 376 3 hdc Histidine decarboxylase Pseudomonas fluorescens
B2HVG6 0.0 583 72 0 374 3 hdc Histidine decarboxylase Acinetobacter baumannii (strain ACICU)
A3M7A4 0.0 582 72 0 374 3 hdc Histidine decarboxylase Acinetobacter baumannii (strain ATCC 17978 / DSM 105126 / CIP 53.77 / LMG 1025 / NCDC KC755 / 5377)
B0VBU8 0.0 580 72 0 374 3 hdc Histidine decarboxylase Acinetobacter baumannii (strain AYE)
B7I459 0.0 580 72 0 374 3 hdc Histidine decarboxylase Acinetobacter baumannii (strain AB0057)
B7GZJ8 0.0 580 72 0 374 3 hdc Histidine decarboxylase Acinetobacter baumannii (strain AB307-0294)
A7MVI6 0.0 540 65 0 374 3 hdc Histidine decarboxylase Vibrio campbellii (strain ATCC BAA-1116)
Q56581 0.0 524 63 0 373 3 hdc Histidine decarboxylase Vibrio anguillarum (strain ATCC 68554 / 775)
Q8L0Z4 1.27e-142 407 85 0 228 3 hdc Histidine decarboxylase (Fragment) Raoultella ornithinolytica
Q98A07 1.85e-100 305 43 3 367 3 hdc Histidine decarboxylase Mesorhizobium japonicum (strain LMG 29417 / CECT 9101 / MAFF 303099)
Q9MA74 4.12e-94 292 41 3 353 1 SDC Serine decarboxylase Arabidopsis thaliana
Q6ESZ9 4.8e-90 282 40 3 348 3 SDC1 Serine decarboxylase 1 Oryza sativa subsp. japonica
Q7X8D4 8.34e-90 280 40 3 330 3 LOC_Os04g04640 Serine decarboxylase 3 Oryza sativa subsp. japonica
Q8RV06 7.99e-88 276 41 2 330 2 Os10g0105700 Serine decarboxylase 2 Oryza sativa subsp. japonica
P54772 3.47e-83 262 39 7 357 2 HDC Histidine decarboxylase Solanum lycopersicum
Q2NHY7 1.97e-29 120 29 10 290 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanosphaera stadtmanae (strain ATCC 43021 / DSM 3091 / JCM 11832 / MCB-3)
Q9UZD5 2.71e-26 111 29 11 293 3 mfnA Probable L-aspartate decarboxylase Pyrococcus abyssi (strain GE5 / Orsay)
O58679 4.55e-25 108 29 10 291 1 mfnA L-aspartate/L-glutamate decarboxylase Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
Q8U1P6 1.82e-23 103 28 10 290 3 mfnA Probable L-aspartate decarboxylase Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
J7SZ64 6.95e-22 99 27 7 280 1 CLOSPO_02083 Tryptophan decarboxylase Clostridium sporogenes (strain ATCC 15579)
Q5JJ82 4.62e-21 97 27 9 281 1 mfnA L-aspartate decarboxylase Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
A0B9M9 4.85e-21 96 27 9 277 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanothrix thermoacetophila (strain DSM 6194 / JCM 14653 / NBRC 101360 / PT)
C5A2X8 7.78e-21 96 27 9 276 3 mfnA Probable L-aspartate decarboxylase Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3)
A2STQ3 8.75e-21 95 25 12 337 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z)
O28275 6.12e-20 93 27 10 278 3 mfnA Probable L-aspartate decarboxylase Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)
A7IAB9 6.79e-20 93 25 12 293 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanoregula boonei (strain DSM 21154 / JCM 14090 / 6A8)
A5ULW4 3.35e-19 91 25 12 356 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanobrevibacter smithii (strain ATCC 35061 / DSM 861 / OCM 144 / PS)
Q8TV92 4.27e-19 91 25 13 343 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938)
Q2FSD2 4.3e-18 88 27 10 281 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanospirillum hungatei JF-1 (strain ATCC 27890 / DSM 864 / NBRC 100397 / JF-1)
B8GDM7 7.21e-18 87 27 9 238 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c)
Q8TUQ9 1.85e-17 86 25 12 319 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)
O27188 1.87e-17 86 27 11 263 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
Q12VA2 9.12e-17 84 25 12 312 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M)
Q8PXA5 1.33e-16 84 23 11 318 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
Q46DU3 1.38e-15 80 23 11 319 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanosarcina barkeri (strain Fusaro / DSM 804)
A6UVR4 8.97e-15 78 25 9 290 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanococcus aeolicus (strain ATCC BAA-1280 / DSM 17508 / OCM 812 / Nankai-3)
Q5V1B4 6.19e-14 75 26 9 276 3 mfnA Probable L-aspartate decarboxylase Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809)
A3CWM4 1.22e-13 75 23 10 299 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1)
Q0W498 1.51e-13 74 29 11 222 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanocella arvoryzae (strain DSM 22066 / NBRC 105507 / MRE50)
Q60358 6.97e-13 72 24 7 250 1 mfnA L-tyrosine/L-aspartate decarboxylase Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q3IT46 1.69e-12 71 26 9 233 3 mfnA Probable L-aspartate decarboxylase Natronomonas pharaonis (strain ATCC 35678 / DSM 2160 / CIP 103997 / JCM 8858 / NBRC 14720 / NCIMB 2260 / Gabara)
A4G060 1.18e-11 68 22 13 353 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanococcus maripaludis (strain C5 / ATCC BAA-1333)
A6VIC0 2.15e-11 68 24 11 288 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanococcus maripaludis (strain C7 / ATCC BAA-1331)
Q9Y194 3.5e-11 68 25 10 268 1 spl-1 Sphingosine-1-phosphate lyase Caenorhabditis elegans
Q6M0Y7 3.61e-11 67 24 9 285 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanococcus maripaludis (strain DSM 14266 / JCM 13030 / NBRC 101832 / S2 / LL)
Q6ZQY3 1.5e-10 66 26 15 335 1 GADL1 Acidic amino acid decarboxylase GADL1 Homo sapiens
Q80WP8 1.69e-10 66 26 9 260 1 Gadl1 Acidic amino acid decarboxylase GADL1 Mus musculus
A6URB4 3.24e-10 64 22 10 283 3 mfnA Probable L-tyrosine/L-aspartate decarboxylase Methanococcus vannielii (strain ATCC 35089 / DSM 1224 / JCM 13029 / OCM 148 / SB)
Q9HSA3 8.68e-10 63 24 10 235 3 mfnA Probable L-aspartate decarboxylase Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
B0R349 8.68e-10 63 24 10 235 3 mfnA Probable L-aspartate decarboxylase Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1)
Q9Y600 9.81e-10 63 24 10 278 1 CSAD Cysteine sulfinic acid decarboxylase Homo sapiens
P20228 1.14e-09 63 25 10 254 1 Gad1 Glutamate decarboxylase Drosophila melanogaster
Q9Z3R1 3.78e-09 61 26 8 219 3 rhbB L-2,4-diaminobutyrate decarboxylase Rhizobium meliloti (strain 1021)
P71362 1.3e-08 60 29 9 218 1 ddc L-2,4-diaminobutyrate decarboxylase Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q5E6F9 1.77e-08 59 25 9 267 1 panP Aspartate 1-decarboxylase Aliivibrio fischeri (strain ATCC 700601 / ES114)
A0A2I6B3P0 2.23e-08 59 26 7 210 1 4HPAAS 4-hydroxyphenylacetaldehyde synthase Rhodiola rosea
A7B1V0 2.41e-08 59 28 7 195 1 RUMGNA_01526 Tryptophan decarboxylase Mediterraneibacter gnavus (strain ATCC 29149 / DSM 114966 / JCM 6515 / VPI C7-9)
I1RV23 4.32e-08 58 25 8 201 2 FG08083 Glutamate decarboxylase-like protein FG08083 Gibberella zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / NRRL 31084 / PH-1)
A0A0A2IDH4 5.5e-08 58 26 10 215 1 cnsB L-tryptophan decarboxylase cnsB Penicillium expansum
P48321 9.4e-08 57 23 9 249 2 GAD2 Glutamate decarboxylase 2 Sus scrofa
P48319 9.81e-08 57 22 11 319 2 GAD1 Glutamate decarboxylase 1 Sus scrofa
Q4PRC2 1e-07 57 23 9 249 2 GAD2 Glutamate decarboxylase 2 Canis lupus familiaris
P18088 1.47e-07 57 22 12 319 1 Gad1 Glutamate decarboxylase 1 Rattus norvegicus
P48320 1.58e-07 57 23 9 249 1 Gad2 Glutamate decarboxylase 2 Mus musculus
P14748 1.61e-07 57 22 11 319 2 GAD1 Glutamate decarboxylase 1 Felis catus
A0PA85 1.61e-07 57 22 11 319 2 GAD1 Glutamate decarboxylase 1 Canis lupus familiaris
Q05329 1.94e-07 56 22 9 249 1 GAD2 Glutamate decarboxylase 2 Homo sapiens
Q05683 2.55e-07 56 23 9 249 1 Gad2 Glutamate decarboxylase 2 Rattus norvegicus
Q64611 3.1e-07 55 23 10 278 1 Csad Cysteine sulfinic acid decarboxylase Rattus norvegicus
P48318 3.12e-07 55 22 11 319 1 Gad1 Glutamate decarboxylase 1 Mus musculus
Q99259 3.56e-07 55 22 11 319 1 GAD1 Glutamate decarboxylase 1 Homo sapiens
Q0VCA1 4.29e-07 55 22 12 319 2 GAD1 Glutamate decarboxylase 1 Bos taurus
Q5R7S7 5.39e-07 55 22 11 319 2 GAD1 Glutamate decarboxylase 1 Pongo abelii
Q5IS68 5.79e-07 55 22 11 319 2 GAD1 Glutamate decarboxylase 1 Pan troglodytes
I0DFJ0 1.32e-06 53 25 8 196 1 None Aromatic-L-amino-acid decarboxylase Bacillus atrophaeus
Q0ZQX0 2.3e-06 53 24 12 285 1 PAAS Phenylacetaldehyde synthase Petunia hybrida
P93082 3.2e-06 52 25 12 280 1 TDC1 Tryptophan decarboxylase TDC1 Camptotheca acuminata
Q8CHN6 6.61e-05 48 25 9 226 2 Sgpl1 Sphingosine-1-phosphate lyase 1 Rattus norvegicus
O95470 0.000138 47 25 8 215 1 SGPL1 Sphingosine-1-phosphate lyase 1 Homo sapiens
E9FCP7 0.000259 46 23 6 196 3 dtxS4 L-aspartate decarboxylase dtxS4 Metarhizium robertsii (strain ARSEF 23 / ATCC MYA-3075)
Q5R4G0 0.000315 46 25 8 215 2 SGPL1 Sphingosine-1-phosphate lyase 1 Pongo abelii
Q8R0X7 0.000439 45 24 10 242 1 Sgpl1 Sphingosine-1-phosphate lyase 1 Mus musculus
A6UUU3 0.000542 45 22 10 271 3 Maeo_0681 O-phospho-L-seryl-tRNA:Cys-tRNA synthase Methanococcus aeolicus (strain ATCC BAA-1280 / DSM 17508 / OCM 812 / Nankai-3)

  • Number of RefSeq hits:

General

Source Morganella morganii S2
Locus tag EHELCC_10255
Feature type CDS
Gene hdc
Product histidine decarboxylase
Location 85733 - 86869 (strand: -1)
Length 1137 (nucleotides) / 378 (amino acids)

Contig

Accession ZDB_219
Length 213167 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2802
Orthogroup size 6
N. genomes 6

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Genomic region

Domains

PF00282 Pyridoxal-dependent decarboxylase conserved domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0076 Amino acid transport and metabolism (E) E Glutamate or tyrosine decarboxylase or a related PLP-dependent protein

Virulence factor Annotation(s)

VF gene ID Protein VF ID Category
VFG044234 histidine decarboxylase VF0936 Nutritional/Metabolic factor

Protein Sequence

MTLSINDQNKLDAFWAYCVKNQYFNIGYPESADFDYTNLERFLRFSINNCGDWGEYCNYLLNSFDFEKEVMEYFADLFKIPFEQSWGYVTNGGTEGNMFGCYLGREIFPDGTLYYSKDTHYSVAKIVKLLRIKSQVVESLPNGEIDYDDLMKKIADDKEAHPIIFANIGTTVRGAIDDIAEIQKRLKAAGIKREDYYLHADAALSGMILPFVDDAQPFTFADGIDSIGVSGHKMIGSPIPCGIVVAKKENVDRISVEIDYISAHDKTITGSRNGHTPLMLWEAIRSHSTEEWKRRITRSLDMAQYAVDRMQKAGINAWRNKNSITVVFPCPSERVWREHCLATSGDVAHLITTAHHLDTAQIDKLIDDVIADFNLHAA

Flanking regions ( +/- flanking 50bp)

TTTGCTCCGCTTCACAGTCTTAACTTTTGAAAAACAAGAGGTAATTAAGTATGACTCTGTCTATCAATGATCAAAACAAACTTGATGCATTCTGGGCTTATTGCGTAAAAAACCAGTATTTCAACATCGGCTATCCTGAATCAGCAGATTTCGATTACACCAACCTGGAACGTTTCTTACGTTTCTCCATCAACAACTGCGGTGACTGGGGCGAATATTGCAACTACCTGCTGAACTCTTTCGATTTCGAGAAAGAAGTGATGGAGTATTTCGCAGACCTGTTCAAAATTCCGTTTGAACAAAGCTGGGGTTATGTGACCAACGGCGGTACCGAAGGTAACATGTTCGGTTGCTACCTGGGCCGTGAAATCTTCCCTGACGGTACCCTGTACTATTCAAAAGATACTCACTATTCCGTTGCGAAAATCGTTAAATTACTGCGTATCAAATCTCAGGTTGTTGAATCTCTGCCAAACGGCGAAATCGACTATGACGATCTGATGAAAAAAATCGCTGACGATAAAGAAGCGCATCCGATCATTTTCGCTAACATCGGTACCACTGTCCGCGGTGCTATTGATGATATCGCTGAAATCCAGAAACGCCTGAAAGCAGCCGGTATCAAACGTGAAGATTACTACCTGCACGCTGATGCGGCACTGAGCGGCATGATCCTGCCATTCGTTGATGATGCACAGCCATTCACGTTTGCTGACGGTATCGACTCAATCGGTGTTTCCGGCCATAAAATGATTGGTTCGCCAATCCCTTGCGGTATCGTTGTTGCGAAGAAAGAAAACGTGGATCGTATTTCTGTTGAAATCGACTACATCTCCGCACACGACAAAACCATCACCGGTTCACGTAACGGTCACACACCACTGATGCTGTGGGAAGCTATCCGTTCACATTCAACTGAGGAATGGAAACGCCGCATCACCCGCAGTCTGGATATGGCTCAGTATGCTGTTGACCGTATGCAGAAAGCCGGTATCAATGCATGGCGCAACAAAAACTCCATCACTGTTGTGTTCCCTTGCCCGTCAGAACGCGTCTGGAGAGAACATTGCCTGGCAACGTCCGGCGACGTGGCTCACCTGATCACCACCGCGCACCATCTGGATACCGCGCAGATCGACAAACTGATCGACGACGTTATCGCGGATTTTAACTTACACGCGGCATAAAAAAAGGCAGTGGTAATTATCCACTGCCCCCTTACGGTTCGTTGCCGGCG