Homologs in group_1465

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_09400 FBDBKF_09400 100.0 Morganella morganii S1 potD spermidine/putrescine ABC transporter substrate-binding protein PotD
NLDBIP_10355 NLDBIP_10355 100.0 Morganella morganii S4 potD spermidine/putrescine ABC transporter substrate-binding protein PotD
LHKJJB_11000 LHKJJB_11000 100.0 Morganella morganii S3 potD spermidine/putrescine ABC transporter substrate-binding protein PotD
HKOGLL_14060 HKOGLL_14060 100.0 Morganella morganii S5 potD spermidine/putrescine ABC transporter substrate-binding protein PotD
F4V73_RS10565 F4V73_RS10565 92.8 Morganella psychrotolerans potD spermidine/putrescine ABC transporter substrate-binding protein PotD
PMI_RS13475 PMI_RS13475 81.6 Proteus mirabilis HI4320 potD spermidine/putrescine ABC transporter substrate-binding protein PotD

Distribution of the homologs in the orthogroup group_1465

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1465

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AFL0 0.0 571 80 1 348 3 potD Spermidine/putrescine-binding periplasmic protein Shigella flexneri
P0AFK9 0.0 571 80 1 348 1 potD Spermidine/putrescine-binding periplasmic protein Escherichia coli (strain K12)
P0A2C7 0.0 566 79 1 348 3 potD Spermidine/putrescine-binding periplasmic protein Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A2C8 0.0 566 79 1 348 3 potD Spermidine/putrescine-binding periplasmic protein Salmonella typhi
P45168 1.62e-133 387 52 2 360 3 potD-B Spermidine/putrescine-binding periplasmic protein 1 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P44731 7.97e-131 380 55 1 334 3 potD-A Spermidine/putrescine-binding periplasmic protein 2 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q9I6J1 1.34e-68 222 37 6 341 1 spuD Putrescine-binding periplasmic protein SpuD Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q02UB7 1.34e-68 222 37 6 341 1 spuD Putrescine-binding periplasmic protein SpuD Pseudomonas aeruginosa (strain UCBPP-PA14)
Q9I6J0 6.87e-63 207 36 6 336 1 spuE Spermidine-binding periplasmic protein SpuE Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P31133 1.13e-60 201 34 8 367 1 potF Putrescine-binding periplasmic protein PotF Escherichia coli (strain K12)
Q9I0P5 1.25e-49 173 32 5 312 1 PA2592 Putrescine/agmatine-binding protein Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9HY16 4.7e-45 160 30 4 304 1 potD Putrescine/cadaverine-binding protein Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9KU25 1.8e-17 85 24 7 303 3 nspS Norspermidine sensor Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
P76108 7.64e-07 53 24 10 274 1 ydcS Bifunctional polyhydroxybutyrate synthase / ABC transporter periplasmic binding protein Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Morganella morganii S2
Locus tag EHELCC_10010
Feature type CDS
Gene potD
Product spermidine/putrescine ABC transporter substrate-binding protein PotD
Location 35594 - 36637 (strand: 1)
Length 1044 (nucleotides) / 347 (amino acids)

Contig

Accession ZDB_219
Length 213167 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1465
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF13416 Bacterial extracellular solute-binding protein

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0687 Amino acid transport and metabolism (E) E Spermidine/putrescine-binding periplasmic protein

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K11069 spermidine/putrescine transport system substrate-binding protein ABC transporters -

Protein Sequence

MKKWSLLLGAGILAAGLSSASADDSKTLYFYNWTEYVPPGLLEQFTKETGIKVIYSTYESNESMYTKLKTYKDGAYDLVVPSTYFVAKMRHEGMLQKIDKSKLSHFDNLDPNLLHKPFDPENDYSIPYIWGATAIGINGDEIDPSSVTSWADLWKPEYKNSLLMTDDAREVFQIALSKLGYSANTTDPAEIEQAYKELQKLRPNILAFNSDNPANPFMEGEVNVGMIWNGSAYVARQSGLNIDVVWPEEGGIFWMDSLAIPANAKNPEGAHKLIDFLLRPEIAAQVAQTIGYPTPNLAAKKLLPAEIVNDKSLYPDEETIRKGQWQDDVGDASVLYESYYQKLKAGR

Flanking regions ( +/- flanking 50bp)

TTACCGCCTGTGATATTCACTGATTAACCCGGGTTGAGGGAAACACTGAAATGAAAAAGTGGTCCTTACTGCTTGGTGCCGGTATTCTGGCAGCGGGCTTGAGTTCAGCATCAGCAGATGACAGTAAAACACTCTATTTCTATAACTGGACGGAATATGTTCCGCCGGGGTTATTAGAGCAGTTTACCAAAGAGACCGGAATCAAGGTGATTTACTCCACCTATGAATCCAACGAAAGCATGTACACCAAACTGAAGACCTACAAAGACGGGGCTTATGACCTGGTGGTGCCTTCAACCTATTTTGTCGCCAAAATGCGCCACGAGGGGATGCTGCAGAAGATCGATAAATCAAAGCTGAGTCACTTTGATAATCTGGATCCGAATCTGCTGCACAAACCGTTTGATCCTGAAAATGATTACTCGATCCCTTATATCTGGGGTGCAACTGCTATCGGGATTAACGGTGACGAGATAGATCCGTCATCTGTGACCTCCTGGGCCGATCTGTGGAAACCTGAGTACAAAAACAGCCTGCTGATGACCGATGATGCCCGCGAAGTGTTCCAGATTGCCCTGAGCAAACTGGGTTATTCAGCAAATACCACCGACCCGGCTGAAATTGAGCAGGCGTATAAAGAGCTGCAAAAACTGCGTCCGAATATTTTAGCGTTTAACTCCGATAACCCGGCCAACCCGTTTATGGAAGGGGAGGTGAATGTCGGGATGATCTGGAACGGCTCCGCTTATGTGGCGCGTCAGTCCGGCCTGAATATTGATGTTGTCTGGCCTGAGGAAGGCGGTATCTTCTGGATGGACAGTCTGGCTATCCCGGCTAATGCCAAAAATCCGGAAGGCGCACATAAGCTGATTGATTTCCTGCTGCGTCCGGAAATTGCGGCACAGGTCGCACAGACTATCGGGTATCCGACCCCGAACCTGGCGGCGAAAAAACTGCTCCCGGCTGAGATTGTGAATGACAAATCACTTTATCCGGATGAGGAAACTATCCGCAAAGGGCAGTGGCAGGATGATGTGGGTGACGCCAGCGTGCTTTATGAAAGCTATTATCAGAAGCTGAAAGCCGGTCGTTAATGTTACTGACGATAAAAAAAGCACCTTCGGGTGCTTTTTTTATGCCTGCA