Homologs in group_2186

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_16460 FBDBKF_16460 100.0 Morganella morganii S1 yegQ tRNA 5-hydroxyuridine modification protein YegQ
NLDBIP_08650 NLDBIP_08650 100.0 Morganella morganii S4 yegQ tRNA 5-hydroxyuridine modification protein YegQ
LHKJJB_05615 LHKJJB_05615 100.0 Morganella morganii S3 yegQ tRNA 5-hydroxyuridine modification protein YegQ
HKOGLL_05300 HKOGLL_05300 100.0 Morganella morganii S5 yegQ tRNA 5-hydroxyuridine modification protein YegQ
F4V73_RS02975 F4V73_RS02975 94.2 Morganella psychrotolerans yegQ tRNA 5-hydroxyuridine modification protein YegQ
PMI_RS07755 PMI_RS07755 88.9 Proteus mirabilis HI4320 yegQ tRNA 5-hydroxyuridine modification protein YegQ

Distribution of the homologs in the orthogroup group_2186

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2186

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P76403 0.0 796 84 0 451 1 trhP tRNA hydroxylation protein P Escherichia coli (strain K12)
P44700 0.0 758 78 2 454 3 trhP tRNA hydroxylation protein P Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P56113 4.08e-73 239 37 9 368 3 trhP tRNA hydroxylation protein P Helicobacter pylori (strain ATCC 700392 / 26695)
Q9ZMR3 4.17e-73 239 38 9 368 3 trhP tRNA hydroxylation protein P Helicobacter pylori (strain J99 / ATCC 700824)
O32034 3.69e-67 224 32 9 420 3 trhP1 tRNA hydroxylation protein P1 Bacillus subtilis (strain 168)
Q57555 2.55e-54 189 32 11 404 3 MJ0090 Uncharacterized protease MJ0090 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
O32035 7.9e-40 148 31 6 316 3 trhP2 tRNA hydroxylation protein P2 Bacillus subtilis (strain 168)
P45527 6.13e-36 138 30 11 321 1 ubiU Ubiquinone biosynthesis protein UbiU Escherichia coli (strain K12)
P76104 2.99e-34 139 27 10 412 1 rlhA 23S rRNA 5-hydroxycytidine C2501 synthase Escherichia coli (strain K12)
P59916 1.55e-27 117 24 12 411 3 prtC Collagenase Porphyromonas gingivalis (strain ATCC BAA-308 / W83)
P33437 1.93e-14 78 22 10 367 1 prtC Collagenase (Fragment) Porphyromonas gingivalis

  • Number of RefSeq hits:

General

Source Morganella morganii S2
Locus tag EHELCC_08325
Feature type CDS
Gene yegQ
Product tRNA 5-hydroxyuridine modification protein YegQ
Location 131936 - 133327 (strand: -1)
Length 1392 (nucleotides) / 463 (amino acids)

Contig

Accession ZDB_217
Length 250991 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2186
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01136 Peptidase family U32
PF16325 Peptidase family U32 C-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0826 Translation, ribosomal structure and biogenesis (J) J 23S rRNA C2501 and tRNA U34 5'-hydroxylation protein RlhA/YrrN/YrrO, U32 peptidase family

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K08303 U32 family peptidase [EC:3.4.-.-] Epithelial cell signaling in Helicobacter pylori infection -

Protein Sequence

MFTPELLSPAGSLKNMRYAFAYGADAVYAGQPRYSLRVRNNEFNHENLAKGIQEAHELGKKFYVVVNIAPHNAKLKTFIRDLEPVIAMGPDALIMSDPGLIMMVREHFPQMDIHLSVQANAVNWATVKFWHQMGLTRVILSRELSLEEIADIRKNVPEIELEVFVHGALCMAYSGRCLLSGYINKRDPNQGTCTNACRWEYKVEEGKEDVVGNIVHKQEPIPVKNIEPTLGAGAPTDKVFLIEEAQRPGEYMTAFEDEHGTYIMNSKDLRAIEHVEKLTQMGVHSLKIEGRTKSFYYCARTAQVYRRAIDDAVAGKPFDPSLLTTLEGLAHRGYTEGFLRRHTHDSYQTYEYGYSVSDSQQFVGEFTGNRVNGLAEVDVKNKFSVGDSLELMTPNGNISFTLDAMNNRKGEATEVAPGNGHIVYLPVPDDVNLEFALLIRNLPGTSTRNPHMPEFTDAAATNG

Flanking regions ( +/- flanking 50bp)

GCCTCCCCCTCCGGGGAAGGTTCTGACTTGAACTCAGATCGGAATACATTATGTTTACACCCGAATTACTCTCTCCGGCGGGCTCGCTGAAGAATATGCGCTATGCGTTCGCTTATGGTGCGGATGCGGTCTATGCCGGACAGCCACGTTACAGCCTGCGTGTCCGTAACAACGAATTTAACCACGAAAACCTCGCCAAAGGCATTCAGGAAGCCCACGAACTGGGCAAGAAATTCTATGTCGTGGTCAATATCGCCCCGCATAACGCCAAACTGAAAACCTTTATCCGTGACCTAGAGCCGGTGATTGCCATGGGTCCGGACGCACTGATTATGTCTGACCCCGGCCTGATCATGATGGTGCGCGAGCATTTCCCGCAGATGGATATCCATTTATCCGTTCAGGCCAATGCCGTGAACTGGGCAACCGTTAAATTCTGGCATCAGATGGGCCTGACCCGTGTGATCCTCTCCCGTGAACTGTCACTCGAAGAAATCGCCGATATCCGCAAAAATGTACCGGAAATTGAGCTGGAAGTGTTTGTTCACGGTGCACTGTGCATGGCCTACTCCGGCCGTTGCCTGCTCTCCGGTTATATCAACAAACGTGACCCGAACCAGGGTACCTGCACCAATGCCTGCCGCTGGGAATATAAAGTCGAGGAAGGCAAAGAGGATGTGGTCGGTAATATCGTCCACAAGCAGGAACCGATTCCGGTGAAAAACATTGAGCCGACCCTCGGTGCCGGTGCCCCGACAGACAAAGTATTCCTGATTGAGGAAGCACAGCGTCCGGGCGAATATATGACCGCGTTCGAAGATGAACACGGTACTTATATTATGAACTCCAAAGATCTGCGGGCTATCGAGCACGTCGAAAAACTGACGCAGATGGGTGTTCACTCCCTGAAAATCGAGGGCCGTACCAAATCCTTCTATTACTGCGCCCGTACCGCACAGGTTTACCGCCGTGCTATTGATGATGCTGTTGCCGGAAAACCGTTTGACCCGTCGCTGCTGACCACGCTGGAAGGCCTGGCACACCGCGGTTATACCGAAGGATTCCTGCGCCGCCATACCCATGACTCTTATCAGACGTATGAGTACGGTTATTCCGTTTCTGATTCCCAGCAGTTTGTCGGTGAGTTTACCGGCAACCGCGTGAACGGCCTGGCTGAAGTGGATGTGAAAAACAAATTCTCCGTCGGCGACAGCCTGGAACTGATGACGCCTAACGGCAATATCAGCTTTACCCTCGATGCCATGAATAACCGCAAAGGGGAAGCCACCGAAGTCGCGCCGGGTAACGGTCATATTGTTTATCTGCCGGTACCGGATGATGTAAACCTGGAATTTGCATTGCTGATCCGTAACTTACCGGGCACCAGCACCCGTAATCCGCATATGCCGGAATTTACCGACGCTGCGGCCACCAACGGGTAAAATTCTGAATTTTCGAATCCGATCACAACAATCAAGTTAGTTATTTCGTA