Homologs in group_118

Help

10 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_03965 FBDBKF_03965 100.0 Morganella morganii S1 virB4 conjugative transfer ATPase
FBDBKF_16795 FBDBKF_16795 62.5 Morganella morganii S1 - conjugative transfer ATPase
EHELCC_10665 EHELCC_10665 62.5 Morganella morganii S2 - conjugative transfer ATPase
NLDBIP_06895 NLDBIP_06895 100.0 Morganella morganii S4 virB4 conjugative transfer ATPase
NLDBIP_11010 NLDBIP_11010 62.5 Morganella morganii S4 - conjugative transfer ATPase
LHKJJB_06430 LHKJJB_06430 100.0 Morganella morganii S3 virB4 conjugative transfer ATPase
LHKJJB_10345 LHKJJB_10345 62.5 Morganella morganii S3 - conjugative transfer ATPase
HKOGLL_04500 HKOGLL_04500 100.0 Morganella morganii S5 virB4 conjugative transfer ATPase
HKOGLL_16510 HKOGLL_16510 62.5 Morganella morganii S5 - conjugative transfer ATPase
PMI_RS12720 PMI_RS12720 100.0 Proteus mirabilis HI4320 - conjugative transfer ATPase

Distribution of the homologs in the orthogroup group_118

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_118

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism

  • Number of RefSeq hits:

General

Source Morganella morganii S2
Locus tag EHELCC_06570
Feature type CDS
Gene virB4
Product conjugative transfer ATPase
Location 52875 - 55742 (strand: 1)
Length 2868 (nucleotides) / 955 (amino acids)

Contig

Accession ZDB_216
Length 269970 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_118
Orthogroup size 11
N. genomes 6

Actions

Genomic region

Domains

PF11130 TraC protein

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3451 Intracellular trafficking, secretion, and vesicular transport (U) U Type IV secretory pathway, VirB4 component

Protein Sequence

MGFSLFRSRRKAQAVSAEKTDENKADKTVHRSTPAENAGLGRQPLSRPGKMTRADEQKIYHANPSFIDYLPWVEFLDEEQCLLLDDGVSVGAVYAVEPAPTEGRSAGRLLEIRDAVEDALQDSLDEHDDNPWVVQFFCQDEDDVSVTLATLRDYILPAARGTAFTEAWLTEMARHLRGIARPEGLFKDTEVTGQPWRGQQRRTRMVVYRRLGNSYTDPMPPVAMLNQMCDRLVSSLGSAGVQCVRQDGRQVHQWLLRHFNPAPDWVDRETLYREGAYWPAAEEAPGTLPVLKDFAETLWFTPPRSDVENGVWWFDNLAHGVVNIEKLRKAPGPGHLTGEQKRGDKNINALMDLFPEGTMLSMTIVTQPQDTLEQEFTRLGKNSVGENTDSQRTRRDVETARGLLGHRHKLYRASLSLLLRAGSVEELNKKRVDLTATLLNAGLEPVKPEYDVAPLNGYLRALPMCFDPQTDKKHWYTRLTWVQHLAGLLPVTGRTSGTGHPGWSFFNRGGGVLTFDPQNKQDRTQNAHLLLFGPTGAGKSATLCAQLSQLMAVRRPRLFIAEAGNSFGLLADYYASLGLSVNKVSVKPGSGVRLPLFADAHQLLMMDEQRLALNADELPETDSESEDDDGQRDILGEMEISARMMITGGDVREEAELKRADRAMIRRALMAGARASYAADRQMLPADLQEALYALSRGEGEEEGRALNPQRRAKAAEMAESLGMFTEPGSFEHELFNLPGELWPEADVTLIDLGHLAREGYEAQMALTMVSLINSINNIAERDQYRARDINFVVDEAHIVTVNPLLSPYVTKVVKMWRKLGAWLWLATQNLDDYPDCAEKMLNMAEWWVCLTMPQKEVEAIARFKTLSEEQKQVLLSAAKLSGCYTEGVVLARKVEALFRVVQPSLYLALGMTEKEEKQQRRVLMEQYGCSELEAAFRVADELDRKRGLPPRVPG

Flanking regions ( +/- flanking 50bp)

TACCATCAAGTGCAGTATGCCCTGCCGGGTGAGCGTGTGGAGGGCTTGTGATGGGATTTTCATTATTCCGCTCACGCCGGAAAGCGCAGGCGGTTTCTGCTGAAAAAACGGATGAAAACAAGGCTGACAAAACCGTACACCGCAGTACACCGGCAGAGAATGCCGGTTTAGGCCGTCAGCCGCTTTCCCGGCCGGGAAAAATGACCCGGGCGGATGAGCAGAAGATTTACCATGCGAATCCGTCCTTTATTGATTACCTGCCCTGGGTGGAATTTCTGGATGAGGAGCAATGCCTGCTGCTTGATGACGGGGTGTCGGTCGGGGCGGTGTATGCCGTTGAGCCGGCGCCGACGGAAGGGCGCTCTGCCGGCCGTCTGCTCGAAATCCGGGATGCGGTGGAGGATGCGCTTCAGGACAGTCTGGATGAGCATGATGATAACCCGTGGGTGGTGCAGTTTTTTTGTCAGGATGAGGACGACGTGAGCGTCACACTGGCCACATTGCGGGACTATATCCTGCCGGCGGCCCGGGGCACCGCGTTTACCGAAGCCTGGCTGACCGAAATGGCGCGTCATTTACGGGGGATTGCCCGTCCGGAAGGGCTGTTTAAGGACACGGAGGTGACCGGACAACCCTGGCGCGGACAGCAGCGCCGGACCCGGATGGTGGTTTACCGCCGGCTGGGGAACAGCTATACCGATCCGATGCCGCCGGTGGCGATGCTCAATCAGATGTGTGACCGGCTGGTCAGCAGTCTGGGCAGTGCCGGCGTGCAGTGTGTCCGCCAGGACGGGAGGCAGGTGCATCAGTGGCTGCTGCGTCATTTCAATCCGGCCCCTGACTGGGTGGACCGGGAGACGCTGTACCGGGAAGGGGCGTACTGGCCGGCGGCGGAGGAAGCCCCGGGCACCCTGCCGGTGCTGAAGGATTTTGCGGAAACGCTGTGGTTTACCCCGCCCCGGTCGGATGTGGAAAACGGCGTGTGGTGGTTTGATAACCTGGCGCACGGTGTGGTGAATATCGAAAAACTGCGTAAAGCCCCGGGGCCGGGGCACCTGACCGGGGAGCAGAAGCGCGGTGACAAAAATATCAATGCGCTGATGGACCTGTTTCCGGAAGGGACGATGCTGTCGATGACCATCGTCACACAGCCTCAGGATACGCTGGAGCAGGAATTTACCCGGCTGGGGAAAAACTCGGTGGGGGAAAACACCGACTCGCAACGTACCCGCCGGGACGTGGAAACCGCCAGAGGTTTACTGGGGCACCGCCATAAGCTTTACCGGGCCTCCCTGTCATTGCTGCTGCGTGCCGGCTCGGTGGAGGAACTGAACAAAAAGCGCGTGGATCTGACGGCCACGCTGCTGAATGCCGGTCTGGAGCCGGTGAAGCCGGAATATGATGTGGCGCCGCTGAACGGGTATCTGCGTGCCCTGCCGATGTGTTTTGACCCGCAGACGGATAAAAAACACTGGTATACCCGGCTGACCTGGGTACAGCACCTGGCCGGATTACTGCCGGTGACCGGGCGCACCAGCGGCACCGGGCATCCCGGCTGGAGTTTCTTTAACCGGGGCGGCGGGGTGCTGACCTTTGATCCGCAGAATAAACAGGATCGTACCCAGAATGCGCATCTGCTGTTATTCGGTCCCACCGGGGCCGGTAAATCCGCCACCTTATGCGCACAGTTATCGCAGCTGATGGCGGTCCGCCGTCCGCGTCTGTTTATTGCGGAGGCCGGTAACTCCTTTGGTTTACTGGCGGACTATTACGCCAGTCTGGGGCTGAGTGTCAATAAGGTCAGTGTCAAGCCCGGCAGCGGGGTGCGTCTGCCGCTGTTTGCGGATGCGCATCAGCTGCTGATGATGGATGAACAGCGTCTGGCACTGAATGCGGATGAACTGCCAGAGACGGACAGTGAATCTGAGGATGATGACGGGCAGCGTGACATTCTGGGGGAAATGGAAATCTCCGCCCGCATGATGATCACCGGCGGGGATGTGCGGGAAGAAGCGGAGCTGAAGCGGGCTGACCGGGCGATGATCCGCCGGGCGCTGATGGCGGGGGCCCGGGCGTCTTATGCCGCCGACCGGCAGATGCTGCCGGCGGATTTGCAGGAGGCGCTGTATGCCCTCTCCCGGGGGGAAGGTGAAGAGGAAGGGCGGGCATTAAATCCGCAGCGCCGGGCGAAAGCGGCCGAAATGGCGGAATCCCTGGGGATGTTTACCGAACCGGGCAGTTTTGAGCATGAGCTGTTTAATCTGCCGGGGGAGCTGTGGCCGGAGGCGGATGTGACCCTGATTGATTTGGGGCACCTGGCGCGGGAAGGGTATGAGGCCCAGATGGCGCTGACGATGGTGAGTCTTATCAACTCCATCAACAATATTGCCGAGCGGGATCAGTACCGGGCCCGGGACATTAATTTTGTGGTGGATGAGGCGCATATCGTGACGGTCAACCCGCTGTTATCCCCCTATGTGACCAAAGTGGTGAAAATGTGGCGGAAACTGGGGGCCTGGCTGTGGCTGGCGACCCAGAACCTCGATGACTATCCGGACTGTGCCGAGAAAATGCTCAATATGGCGGAGTGGTGGGTGTGTCTGACGATGCCGCAGAAAGAGGTGGAGGCAATCGCCCGCTTTAAGACGCTCAGTGAGGAGCAGAAACAGGTGCTGCTGTCCGCAGCCAAACTCTCCGGCTGTTACACGGAAGGGGTGGTGCTGGCGCGGAAAGTGGAGGCGCTGTTCCGGGTGGTACAGCCGAGCTTATATCTGGCGCTGGGGATGACGGAAAAAGAGGAGAAGCAGCAACGGCGGGTGCTGATGGAGCAATACGGATGCAGTGAGCTGGAAGCGGCGTTCAGGGTGGCAGATGAACTTGACCGGAAACGGGGGTTACCGCCCCGGGTGCCGGGATGATGAAACGGGTGGAGCAGGGAGTGGGTAAACCGTGTTGCAGCACGGCTTAC