Homologs in group_1481

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_09560 FBDBKF_09560 100.0 Morganella morganii S1 yadH ABC-type multidrug transport system, permease component
NLDBIP_04360 NLDBIP_04360 100.0 Morganella morganii S4 yadH ABC-type multidrug transport system, permease component
LHKJJB_14270 LHKJJB_14270 100.0 Morganella morganii S3 yadH ABC-type multidrug transport system, permease component
HKOGLL_12265 HKOGLL_12265 100.0 Morganella morganii S5 yadH ABC-type multidrug transport system, permease component
F4V73_RS00805 F4V73_RS00805 92.3 Morganella psychrotolerans - ABC transporter permease
PMI_RS03030 PMI_RS03030 77.0 Proteus mirabilis HI4320 - ABC transporter permease

Distribution of the homologs in the orthogroup group_1481

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1481

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AFQ1 0.0 561 74 1 367 3 ybhR Probable multidrug ABC transporter permease YbhR Shigella flexneri
P0AFP9 0.0 561 74 1 367 1 ybhR Probable multidrug ABC transporter permease YbhR Escherichia coli (strain K12)
P0AFQ0 0.0 561 74 1 367 3 ybhR Probable multidrug ABC transporter permease YbhR Escherichia coli O157:H7
P0AFQ2 1.83e-39 147 26 4 336 1 ybhS Probable multidrug ABC transporter permease YbhS Escherichia coli (strain K12)
P0AFQ3 1.83e-39 147 26 4 336 3 ybhS Probable multidrug ABC transporter permease YbhS Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AFQ4 1.83e-39 147 26 4 336 3 ybhS Probable multidrug ABC transporter permease YbhS Escherichia coli O157:H7
P37624 3.89e-26 113 24 2 354 1 rbbA Ribosome-associated ATPase Escherichia coli (strain K12)
P0AGH2 3.32e-24 105 25 9 380 3 yhhJ Inner membrane transport permease YhhJ Shigella flexneri
P0AGH1 3.32e-24 105 25 9 380 1 yhhJ Inner membrane transport permease YhhJ Escherichia coli (strain K12)
Q8T674 8.79e-16 82 29 4 176 3 abcG20 ABC transporter G family member 20 Dictyostelium discoideum
Q55EH8 1.14e-14 79 21 9 378 3 abcG23 ABC transporter G family member 23 Dictyostelium discoideum
P48278 7.66e-10 62 24 4 206 3 ycf38 Putative transport permease ycf38 Cyanophora paradoxa
Q1XDG5 1.81e-05 49 27 6 180 3 ycf38 Putative transport permease ycf38 Neopyropia yezoensis
A0A4P8GG95 6.21e-05 48 23 4 156 1 eupT ABC transporter eupT Phoma sp.
O52619 0.000244 45 25 3 144 3 nodJ Nodulation protein J Rhizobium meliloti (strain 1021)
P72336 0.000262 45 26 1 126 3 nodJ Nodulation protein J Rhizobium sp. (strain N33)
P51321 0.000284 45 26 5 182 3 ycf38 Putative transport permease ycf38 Porphyra purpurea
P50333 0.00029 45 27 2 129 3 nodJ Nodulation protein J Neorhizobium galegae
P06755 0.000342 45 28 2 129 3 nodJ Nodulation protein J Rhizobium leguminosarum bv. viciae
P26025 0.000829 44 26 6 179 3 nodJ Nodulation protein J Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110)

  • Number of RefSeq hits:

General

Source Morganella morganii S2
Locus tag EHELCC_04360
Feature type CDS
Gene yadH
Product ABC-type multidrug transport system, permease component
Location 202949 - 204046 (strand: 1)
Length 1098 (nucleotides) / 365 (amino acids)

Contig

Accession ZDB_214
Length 335585 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1481
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF12698 ABC-2 family transporter protein

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0842 Defense mechanisms (V) V ABC-type multidrug transport system, permease component

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K25180 drug efflux transport system permease protein - -

Protein Sequence

MFHRILTLIIKELQLLLRERQTRTILIVPVIFQMILFPLAATLEVTNATIAIYDEDKGPASIELTQQFAKASAFSDVLLIQNRHDVQDVIDNRKALLLVHFPQNFSAQLAAQKPAQLQILLDGRNSNSAQIAANYVQQITAHYQQERMPQAVTSELVVRNWYNPNLDYKWFIVPSLVALITTIGVMIVTSLSVAREREQGTLDQLLVSPLTTGEIFVGKAVPALIVATVQASIVLVIGIFAYRIPFSGSLILFYFTMMIYGLSLVGFGLLISALSATQQQAFIGVFVFMMPAVLLSGYIAPVENMPVWLQHITWVNPIRHFNEITKQIYLKDADFSVISQSLWPLLVIAVTTGTAAYALFRRKIA

Flanking regions ( +/- flanking 50bp)

CGGCCTGACCGCCCTGAAAACCCGCCGCCGGCTTGATTAAGGAGACTGCCATGTTTCATCGGATACTCACCTTAATTATCAAAGAGCTGCAATTACTTCTCCGAGAGCGGCAGACCCGTACGATCCTGATCGTACCGGTAATTTTTCAGATGATTTTGTTCCCGCTGGCGGCAACGCTGGAAGTCACCAACGCAACTATCGCCATTTATGATGAGGACAAAGGCCCCGCATCCATTGAACTGACCCAGCAGTTTGCCAAAGCCAGTGCGTTTTCTGATGTGCTGCTGATCCAGAACCGGCATGATGTACAGGATGTGATTGATAACCGCAAAGCCCTGCTGCTGGTGCATTTCCCGCAGAACTTCAGTGCTCAGCTCGCCGCACAGAAACCGGCACAGCTGCAAATCCTGCTCGACGGACGGAATTCCAACAGTGCGCAGATTGCCGCCAATTATGTTCAGCAAATCACCGCGCATTACCAGCAGGAGCGGATGCCGCAGGCGGTCACCAGTGAGCTGGTGGTGCGCAACTGGTATAACCCGAATCTGGATTACAAATGGTTTATCGTGCCGTCGCTGGTAGCGCTGATCACCACTATCGGCGTAATGATTGTCACCTCACTGTCGGTTGCCCGCGAACGGGAACAAGGCACGCTGGATCAGTTACTGGTTTCCCCGCTGACCACCGGTGAAATCTTTGTCGGCAAGGCCGTTCCGGCACTGATTGTGGCCACGGTACAGGCCAGCATTGTGCTGGTGATCGGCATTTTTGCTTACCGTATCCCCTTCTCCGGCTCACTGATCCTGTTTTATTTCACCATGATGATATACGGGCTGTCGCTGGTCGGGTTCGGTCTGTTAATCTCCGCCCTTTCCGCGACTCAGCAGCAGGCCTTTATCGGTGTGTTTGTCTTTATGATGCCTGCCGTGCTGCTGTCCGGTTATATTGCCCCGGTGGAGAATATGCCGGTCTGGCTGCAACATATCACTTGGGTCAATCCTATCCGCCATTTCAATGAAATCACCAAACAGATTTACCTCAAAGATGCGGATTTCAGTGTTATCAGCCAGAGCCTCTGGCCGTTACTGGTGATCGCCGTGACCACCGGAACCGCCGCCTATGCGTTGTTCCGGCGCAAGATTGCGTAAATCAGAACGCAAAAAGGCCGGTTTTCACCGGCCTTTCATTGTTACATCCT