Homologs in group_1481

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_09560 FBDBKF_09560 92.3 Morganella morganii S1 yadH ABC-type multidrug transport system, permease component
EHELCC_04360 EHELCC_04360 92.3 Morganella morganii S2 yadH ABC-type multidrug transport system, permease component
NLDBIP_04360 NLDBIP_04360 92.3 Morganella morganii S4 yadH ABC-type multidrug transport system, permease component
LHKJJB_14270 LHKJJB_14270 92.3 Morganella morganii S3 yadH ABC-type multidrug transport system, permease component
HKOGLL_12265 HKOGLL_12265 92.3 Morganella morganii S5 yadH ABC-type multidrug transport system, permease component
PMI_RS03030 PMI_RS03030 77.3 Proteus mirabilis HI4320 - ABC transporter permease

Distribution of the homologs in the orthogroup group_1481

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1481

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AFQ1 0.0 570 76 1 367 3 ybhR Probable multidrug ABC transporter permease YbhR Shigella flexneri
P0AFP9 0.0 570 76 1 367 1 ybhR Probable multidrug ABC transporter permease YbhR Escherichia coli (strain K12)
P0AFQ0 0.0 570 76 1 367 3 ybhR Probable multidrug ABC transporter permease YbhR Escherichia coli O157:H7
P0AFQ2 7.74e-40 147 27 4 336 1 ybhS Probable multidrug ABC transporter permease YbhS Escherichia coli (strain K12)
P0AFQ3 7.74e-40 147 27 4 336 3 ybhS Probable multidrug ABC transporter permease YbhS Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AFQ4 7.74e-40 147 27 4 336 3 ybhS Probable multidrug ABC transporter permease YbhS Escherichia coli O157:H7
P37624 2.07e-30 126 25 2 354 1 rbbA Ribosome-associated ATPase Escherichia coli (strain K12)
P0AGH2 2.52e-28 117 26 10 380 3 yhhJ Inner membrane transport permease YhhJ Shigella flexneri
P0AGH1 2.52e-28 117 26 10 380 1 yhhJ Inner membrane transport permease YhhJ Escherichia coli (strain K12)
Q8T674 1.9e-16 84 30 6 189 3 abcG20 ABC transporter G family member 20 Dictyostelium discoideum
Q55EH8 4.27e-15 80 22 13 398 3 abcG23 ABC transporter G family member 23 Dictyostelium discoideum
P48278 1.48e-09 62 26 6 210 3 ycf38 Putative transport permease ycf38 Cyanophora paradoxa
P72336 1.54e-05 49 29 2 130 3 nodJ Nodulation protein J Rhizobium sp. (strain N33)
O52619 3.01e-05 48 27 3 142 3 nodJ Nodulation protein J Rhizobium meliloti (strain 1021)
P50333 0.0002 46 26 2 135 3 nodJ Nodulation protein J Neorhizobium galegae
Q1XDG5 0.000286 45 27 5 176 3 ycf38 Putative transport permease ycf38 Neopyropia yezoensis
P26025 0.000673 44 26 6 180 3 nodJ Nodulation protein J Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS00805
Feature type CDS
Gene -
Product ABC transporter permease
Location 166057 - 167154 (strand: -1)
Length 1098 (nucleotides) / 365 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1481
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF12698 ABC-2 family transporter protein

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0842 Defense mechanisms (V) V ABC-type multidrug transport system, permease component

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K25180 drug efflux transport system permease protein - -

Protein Sequence

MFHRIFTLIIKELQLLLRERQTRTILIVPVIFQMILFPLAATLEVTNATIAIYDEDKGAASVELTQQFAKASAFSQVLLLQNRQEVREAIDNRQALLLVHFPQNFSAHLAAKTPAQLQILLDGRNSNSAQIAANYVQQIVANYQQERMPQAVTSELVVRNWYNPNLDYKWFIVPSLVALITTIGVMIVTSLSVAREREQGTLDQLLVSPLTTGEIFVGKAVPALIVATAQASIVLVIGIFAYQIPFSGSLLLFYFTMSLYGLSLVGFGLLISALSATQQQAFIGVFVFMMPAVLLSGYIAPVENMPLWLQHITWINPIRHFNEITKQIYLKDAGFSVIWQSLWPLLVIAVITGTAAYTLFRRKVA

Flanking regions ( +/- flanking 50bp)

CGGGCTGACAGCACTGAAAACCCGCCGCCGGCTGGATTAAGGAGAAAACAATGTTTCACCGGATTTTCACCTTAATTATTAAAGAATTACAGCTTCTTTTGCGCGAACGGCAAACCAGGACAATCCTGATCGTCCCGGTGATTTTTCAGATGATTTTGTTTCCGCTCGCCGCAACACTGGAAGTCACCAACGCGACAATCGCTATTTATGATGAAGACAAAGGCGCGGCATCCGTTGAACTGACCCAGCAATTTGCCAAAGCGAGTGCGTTTTCACAGGTTCTGCTGTTACAGAACAGGCAGGAAGTCCGTGAGGCAATCGATAACCGGCAGGCGCTGCTTTTAGTGCATTTCCCGCAGAATTTCAGCGCACACCTGGCAGCAAAAACGCCTGCACAATTGCAGATCCTGCTGGACGGACGCAACTCAAACAGTGCGCAGATTGCCGCCAACTATGTGCAGCAGATAGTGGCAAATTATCAGCAGGAACGCATGCCGCAAGCCGTCACCAGTGAGCTGGTGGTGCGCAACTGGTACAACCCGAATCTGGATTACAAATGGTTTATCGTGCCCTCGCTGGTGGCGCTGATTACCACTATCGGCGTGATGATTGTAACCTCTCTGTCTGTCGCCCGTGAGCGGGAACAGGGCACGCTGGATCAGTTACTGGTTTCCCCGCTTACCACGGGTGAGATTTTTGTCGGCAAGGCAGTTCCGGCATTGATTGTGGCAACGGCACAGGCAAGTATTGTGCTGGTGATCGGCATTTTTGCCTATCAAATCCCCTTCTCCGGCTCGCTGCTCCTGTTCTACTTCACCATGAGTCTGTACGGCTTATCACTGGTCGGCTTCGGGCTGCTTATCTCCGCCCTTTCTGCTACGCAACAGCAGGCGTTTATCGGCGTATTTGTCTTTATGATGCCCGCTGTACTGCTTTCCGGCTATATTGCGCCGGTAGAAAACATGCCGCTGTGGCTGCAACATATCACCTGGATAAATCCCATCCGTCATTTCAATGAAATCACCAAACAGATTTACCTGAAAGATGCCGGTTTCAGTGTGATCTGGCAAAGCCTGTGGCCGCTGCTGGTGATCGCCGTTATTACCGGTACTGCTGCATATACCTTGTTCCGGCGCAAGGTTGCGTAAAAATCACGGACAGGAAATAAACAGGAGCACGATAACAGTGATTATTGATA