Homologs in group_1481

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_09560 FBDBKF_09560 77.0 Morganella morganii S1 yadH ABC-type multidrug transport system, permease component
EHELCC_04360 EHELCC_04360 77.0 Morganella morganii S2 yadH ABC-type multidrug transport system, permease component
NLDBIP_04360 NLDBIP_04360 77.0 Morganella morganii S4 yadH ABC-type multidrug transport system, permease component
LHKJJB_14270 LHKJJB_14270 77.0 Morganella morganii S3 yadH ABC-type multidrug transport system, permease component
HKOGLL_12265 HKOGLL_12265 77.0 Morganella morganii S5 yadH ABC-type multidrug transport system, permease component
F4V73_RS00805 F4V73_RS00805 77.3 Morganella psychrotolerans - ABC transporter permease

Distribution of the homologs in the orthogroup group_1481

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1481

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AFQ1 0.0 573 75 1 369 3 ybhR Probable multidrug ABC transporter permease YbhR Shigella flexneri
P0AFP9 0.0 573 75 1 369 1 ybhR Probable multidrug ABC transporter permease YbhR Escherichia coli (strain K12)
P0AFQ0 0.0 573 75 1 369 3 ybhR Probable multidrug ABC transporter permease YbhR Escherichia coli O157:H7
P0AFQ2 6.32e-39 145 26 4 338 1 ybhS Probable multidrug ABC transporter permease YbhS Escherichia coli (strain K12)
P0AFQ3 6.32e-39 145 26 4 338 3 ybhS Probable multidrug ABC transporter permease YbhS Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AFQ4 6.32e-39 145 26 4 338 3 ybhS Probable multidrug ABC transporter permease YbhS Escherichia coli O157:H7
P37624 1.49e-32 132 26 5 360 1 rbbA Ribosome-associated ATPase Escherichia coli (strain K12)
P0AGH2 1.99e-20 94 24 13 388 3 yhhJ Inner membrane transport permease YhhJ Shigella flexneri
P0AGH1 1.99e-20 94 24 13 388 1 yhhJ Inner membrane transport permease YhhJ Escherichia coli (strain K12)
Q8T674 1.95e-16 84 25 11 314 3 abcG20 ABC transporter G family member 20 Dictyostelium discoideum
P48278 1.94e-11 67 27 4 183 3 ycf38 Putative transport permease ycf38 Cyanophora paradoxa
Q55EH8 3.77e-11 68 25 0 143 3 abcG23 ABC transporter G family member 23 Dictyostelium discoideum
P06755 0.000173 46 26 2 151 3 nodJ Nodulation protein J Rhizobium leguminosarum bv. viciae
P50333 0.000303 45 26 3 148 3 nodJ Nodulation protein J Neorhizobium galegae

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS03030
Feature type CDS
Gene -
Product ABC transporter permease
Location 667062 - 668171 (strand: -1)
Length 1110 (nucleotides) / 369 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1481
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF12698 ABC-2 family transporter protein

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0842 Defense mechanisms (V) V ABC-type multidrug transport system, permease component

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K25180 drug efflux transport system permease protein - -

Protein Sequence

MFHRLLTLIMKELQSLLQEPQTRIILILPVIFQMILFPFAATLDVTNASVAIFDEDNGKQSIELTQRIAKASAFSETLLLKSEHEIKETINNRKALLLVRFPQNFSANLASHTPVKLQLILDGRNSNSAQIAANYVQQIVQNYQTELAGDTPSLLNKSELVVRNWYNPNLNYKWFIVPSLVALIITIGVMIVTSLSVAREREQGTLDQLLVSPLSTWQIFVGKAVPAMVVAAVQGTIVLIIGIFGYQIPFSGSLLLFYFTMLIYGLSLVGFGLLISALSSTQQQAFIGVFVFMMPAVLLSGYISPVENMPVWLQQATWINPIRHFTDITKQIYLKNADITVIWHSLWALIVIAIGTGSIAYYLFCRKIV

Flanking regions ( +/- flanking 50bp)

TAACGGCGTTAGCAACACGTCGTCGCTTAGATTAATAAGGGAGAGTTTTTATGTTTCATCGTCTTCTCACCCTGATAATGAAAGAGCTACAGTCATTATTACAAGAGCCGCAAACACGGATTATCTTAATATTACCGGTTATCTTTCAGATGATCTTATTCCCTTTTGCTGCCACCCTTGATGTTACCAATGCCTCTGTTGCTATTTTTGATGAAGACAATGGTAAACAATCTATTGAATTAACCCAACGCATAGCCAAAGCCAGTGCTTTTTCTGAAACCCTATTATTAAAAAGTGAACATGAAATTAAAGAGACGATTAATAATCGTAAAGCCTTGCTATTGGTGCGTTTTCCACAAAATTTTAGTGCTAATTTAGCCAGTCATACTCCGGTAAAATTACAATTAATTCTTGATGGACGTAATTCTAATAGTGCACAAATTGCGGCAAATTATGTACAACAAATTGTGCAAAATTATCAAACAGAATTAGCCGGCGATACCCCATCTTTACTGAATAAAAGCGAATTAGTAGTACGTAATTGGTATAACCCCAATTTAAACTATAAATGGTTTATTGTGCCTTCTTTAGTGGCCTTAATTATCACCATCGGAGTAATGATAGTAACATCACTGTCTGTTGCTAGAGAGCGAGAGCAAGGGACATTAGATCAGCTATTAGTTTCACCGTTATCAACTTGGCAAATCTTTGTAGGAAAAGCGGTTCCTGCCATGGTTGTTGCGGCAGTACAGGGAACCATTGTATTAATTATCGGTATTTTCGGCTATCAAATACCTTTTTCAGGCTCACTGCTATTATTTTACTTTACCATGCTTATTTACGGTTTATCGCTGGTAGGTTTTGGGCTTTTGATTTCCGCGTTAAGTTCAACACAACAACAAGCATTTATTGGTGTGTTCGTATTTATGATGCCCGCAGTATTATTATCAGGCTATATTTCTCCAGTGGAAAATATGCCAGTTTGGTTACAGCAAGCCACATGGATAAACCCAATCCGTCATTTCACTGATATTACCAAACAAATCTACCTCAAAAATGCCGATATTACCGTAATATGGCATAGTTTATGGGCACTGATTGTTATTGCTATTGGGACAGGCTCTATTGCCTATTATCTTTTCTGCAGGAAGATAGTATAAAATCTGTACCTTGATAGATAAGAATAAACATCTCACGCTATAAATAACGA