Homologs in group_2504

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5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_01860 FBDBKF_01860 100.0 Morganella morganii S1 rbsB ABC-type sugar transport system, periplasmic component, contains N-terminal xre family HTH domain
NLDBIP_01130 NLDBIP_01130 100.0 Morganella morganii S4 rbsB ABC-type sugar transport system, periplasmic component, contains N-terminal xre family HTH domain
LHKJJB_00905 LHKJJB_00905 100.0 Morganella morganii S3 rbsB ABC-type sugar transport system, periplasmic component, contains N-terminal xre family HTH domain
HKOGLL_00945 HKOGLL_00945 100.0 Morganella morganii S5 rbsB ABC-type sugar transport system, periplasmic component, contains N-terminal xre family HTH domain
F4V73_RS04205 F4V73_RS04205 96.0 Morganella psychrotolerans - substrate-binding domain-containing protein

Distribution of the homologs in the orthogroup group_2504

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2504

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
A4WER1 2.67e-14 75 24 6 302 3 lsrB Autoinducer 2-binding protein LsrB Enterobacter sp. (strain 638)
P76142 2.69e-14 75 25 8 306 1 lsrB Autoinducer 2-binding protein LsrB Escherichia coli (strain K12)
B1XEA4 2.69e-14 75 25 8 306 3 lsrB Autoinducer 2-binding protein LsrB Escherichia coli (strain K12 / DH10B)
B1LF99 6.44e-14 74 25 8 306 3 lsrB Autoinducer 2-binding protein LsrB Escherichia coli (strain SMS-3-5 / SECEC)
A8A069 6.44e-14 74 26 9 312 3 lsrB Autoinducer 2-binding protein LsrB Escherichia coli O9:H4 (strain HS)
Q8XAY9 6.44e-14 74 25 8 306 3 lsrB Autoinducer 2-binding protein LsrB Escherichia coli O157:H7
B1IRU4 9.23e-14 74 26 9 312 3 lsrB Autoinducer 2-binding protein LsrB Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks)
P0C888 4.5e-13 72 25 8 306 3 lsrB Autoinducer 2-binding protein LsrB Shigella flexneri serotype 5b (strain 8401)
A7ZLX3 4.5e-13 72 25 8 306 3 lsrB Autoinducer 2-binding protein LsrB Escherichia coli O139:H28 (strain E24377A / ETEC)
A6TEB5 5.64e-13 72 24 5 297 3 lsrB Autoinducer 2-binding protein LsrB Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
P0C887 6.26e-13 72 25 8 306 3 lsrB Autoinducer 2-binding protein LsrB Shigella flexneri
A1JJ52 8.83e-13 71 25 9 314 3 lsrB Autoinducer 2-binding protein LsrB Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)
Q57HE0 1.09e-12 71 23 7 307 3 lsrB Autoinducer 2-binding protein LsrB Salmonella choleraesuis (strain SC-B67)
A4TQL8 1.22e-12 71 24 8 316 3 lsrB Autoinducer 2-binding protein LsrB Yersinia pestis (strain Pestoides F)
Q1CN18 1.22e-12 71 24 8 316 3 lsrB Autoinducer 2-binding protein LsrB Yersinia pestis bv. Antiqua (strain Nepal516)
A9R0S5 1.22e-12 71 24 8 316 3 lsrB Autoinducer 2-binding protein LsrB Yersinia pestis bv. Antiqua (strain Angola)
Q74PW2 1.22e-12 71 24 8 316 1 lsrB Autoinducer 2-binding protein LsrB Yersinia pestis
Q1C135 1.22e-12 71 24 8 316 3 lsrB Autoinducer 2-binding protein LsrB Yersinia pestis bv. Antiqua (strain Antiqua)
Q66EZ2 1.63e-12 70 24 8 316 3 lsrB Autoinducer 2-binding protein LsrB Yersinia pseudotuberculosis serotype I (strain IP32953)
B2K3F8 1.63e-12 70 24 8 316 3 lsrB Autoinducer 2-binding protein LsrB Yersinia pseudotuberculosis serotype IB (strain PB1/+)
B1JLQ3 2.68e-12 70 24 8 312 3 lsrB Autoinducer 2-binding protein LsrB Yersinia pseudotuberculosis serotype O:3 (strain YPIII)
A7FMK0 2.68e-12 70 24 8 312 3 lsrB Autoinducer 2-binding protein LsrB Yersinia pseudotuberculosis serotype O:1b (strain IP 31758)
Q5PJE4 4.6e-12 69 23 7 307 3 lsrB Autoinducer 2-binding protein LsrB Salmonella paratyphi A (strain ATCC 9150 / SARB42)
Q8Z2X8 7.55e-12 68 23 8 318 1 lsrB Autoinducer 2-binding protein LsrB Salmonella typhi
Q8ZKQ1 7.91e-12 68 23 7 307 1 lsrB Autoinducer 2-binding protein LsrB Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
A9MZG4 8.36e-12 68 23 8 318 3 lsrB Autoinducer 2-binding protein LsrB Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
Q2PBL7 1.2e-10 65 23 6 289 3 lsrB Autoinducer 2-binding protein LsrB Photorhabdus luminescens
Q7MB18 3.01e-10 63 23 6 289 3 lsrB Autoinducer 2-binding protein LsrB Photorhabdus laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01)
Q2PBM5 3.78e-09 60 23 7 305 3 lsrB Autoinducer 2-binding protein LsrB Photorhabdus temperata
P39265 1.72e-07 55 24 8 280 1 alsB D-allose-binding periplasmic protein Escherichia coli (strain K12)
P36949 1.58e-05 49 23 9 308 1 rbsB Ribose import binding protein RbsB Bacillus subtilis (strain 168)
Q9F9B2 2.25e-05 49 29 2 119 1 frcB Fructose import binding protein FrcB Rhizobium meliloti
P0A2C5 0.000359 45 24 9 293 1 rbsB Ribose import binding protein RbsB Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A2C6 0.000359 45 24 9 293 3 rbsB Ribose import binding protein RbsB Salmonella typhi
P55568 0.000398 45 25 8 217 3 NGR_a02500 Probable ABC transporter periplasmic-binding protein y4mI Sinorhizobium fredii (strain NBRC 101917 / NGR234)
P45047 0.000571 44 27 8 159 3 xylF D-xylose-binding periplasmic protein Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

  • Number of RefSeq hits:

General

Source Morganella morganii S2
Locus tag EHELCC_02330
Feature type CDS
Gene rbsB
Product ABC-type sugar transport system, periplasmic component, contains N-terminal xre family HTH domain
Location 447527 - 448501 (strand: -1)
Length 975 (nucleotides) / 324 (amino acids)

Contig

Accession ZDB_213
Length 680219 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2504
Orthogroup size 6
N. genomes 6

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Genomic region

Domains

PF13407 Periplasmic binding protein domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1879 Carbohydrate transport and metabolism (G) G ABC-type sugar transport system, periplasmic component, contains N-terminal xre family HTH domain

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K02058 simple sugar transport system substrate-binding protein - -

Protein Sequence

MKKSFFKVAALSVALFSASVMAKEYEIVNVVKVSGIPWFNQMDKGVQQAAKDLGVNAYQVGPSTPDPAQQVKIIEDLIAKKVDAITVVPNDVTVLEPVFKKAREQGIIVLTHEAPDGHNADWDIETIDNDAYAKATMDELAKNMGGKGGYVIYVGSLTVPLHNNWANLAVEYQKKTYPEMFEVTSRMPVAESIDASFAATNDLMKAHPEMKGIVSYGSLGLIGAGEAIKKKRAKNKISTAGILMPAQAAPYLKGGEIKKGFLWNPADAGYALVSVSKDMLDGKKVTDGVEVKDLGKAEIDTQKQVIKFNKILEVDGNNATSLGF

Flanking regions ( +/- flanking 50bp)

TTGGTCTCCCTGCAACACTCTCTGTATCCATATAAAAAGGGTTATTACCGATGAAGAAATCATTTTTTAAAGTTGCGGCATTATCTGTTGCACTCTTTTCCGCCAGCGTCATGGCAAAAGAATACGAAATCGTCAACGTCGTCAAAGTCTCCGGGATTCCGTGGTTTAACCAGATGGATAAAGGGGTTCAGCAGGCGGCAAAAGATCTGGGCGTGAATGCGTATCAGGTCGGGCCTTCCACGCCGGATCCGGCTCAGCAGGTAAAAATCATTGAAGACCTGATTGCCAAGAAAGTCGATGCCATCACCGTGGTACCGAATGATGTGACTGTTCTTGAGCCGGTCTTTAAGAAAGCCCGTGAACAGGGAATCATTGTGCTGACTCACGAAGCGCCGGACGGCCATAACGCCGACTGGGATATCGAAACCATCGATAACGATGCTTATGCCAAAGCAACCATGGATGAACTGGCGAAAAACATGGGCGGCAAAGGCGGCTATGTGATTTATGTCGGCTCCCTGACCGTTCCTCTGCACAACAACTGGGCAAACCTGGCGGTTGAGTATCAGAAGAAAACCTATCCGGAAATGTTTGAAGTGACCAGCCGCATGCCGGTTGCGGAAAGCATCGATGCCTCTTTCGCGGCAACCAATGACCTGATGAAAGCTCATCCTGAAATGAAAGGGATTGTTTCTTACGGTTCACTGGGCCTGATTGGTGCCGGTGAGGCCATCAAGAAAAAACGTGCGAAAAACAAAATCAGCACCGCGGGTATCCTGATGCCTGCACAGGCTGCACCGTATCTGAAAGGCGGCGAAATCAAGAAAGGTTTCCTGTGGAACCCGGCTGATGCGGGTTACGCACTGGTGTCTGTCTCCAAAGATATGCTGGACGGCAAAAAAGTAACTGACGGTGTGGAAGTCAAAGATCTGGGTAAAGCTGAAATCGATACTCAGAAACAGGTGATAAAATTCAATAAAATCCTGGAAGTTGACGGCAATAACGCCACCTCGCTCGGTTTCTGATCCTTCTTTATTTTTTGTTAAAAAGGGCAGCATCCATGCTGCCCTGTCAT