Orthogroup:group_2504


Homologs in group_2504

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_01860 FBDBKF_01860 Morganella morganii S1 rbsB ABC-type sugar transport system, periplasmic component, contains N-terminal xre family HTH domain
EHELCC_02330 EHELCC_02330 Morganella morganii S2 rbsB ABC-type sugar transport system, periplasmic component, contains N-terminal xre family HTH domain
NLDBIP_01130 NLDBIP_01130 Morganella morganii S4 rbsB ABC-type sugar transport system, periplasmic component, contains N-terminal xre family HTH domain
LHKJJB_00905 LHKJJB_00905 Morganella morganii S3 rbsB ABC-type sugar transport system, periplasmic component, contains N-terminal xre family HTH domain
HKOGLL_00945 HKOGLL_00945 Morganella morganii S5 rbsB ABC-type sugar transport system, periplasmic component, contains N-terminal xre family HTH domain
F4V73_RS04205 F4V73_RS04205 Morganella psychrotolerans - substrate-binding domain-containing protein

Distribution of group_2504 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_2504 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_2504

Orthogroup content: 6 members

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This page summarizes the annotation of all members of the orthologous group group_2504.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 rbsB 5
2 - 1

Product

# Product Occurence
1 ABC-type sugar transport system, periplasmic component, contains N-terminal xre family HTH domain 5
2 substrate-binding domain-containing protein 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1879 6 G Carbohydrate transport and metabolism (G) ABC-type sugar transport system, periplasmic component, contains N-terminal xre family HTH domain

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K02058 6 simple sugar transport system substrate-binding protein - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF13407 6 Periplasmic binding protein domain

Annotations of the 36 SwissProt hits

Annotation Number of occurrences
Autoinducer 2-binding protein LsrB 29
D-allose-binding periplasmic protein 1
D-xylose-binding periplasmic protein 1
Fructose import binding protein FrcB 1
Probable ABC transporter periplasmic-binding protein y4mI 1
Ribose import binding protein RbsB 3

Protein length

Unique protein length 324

Protein length distribution