Homologs in group_433

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_00380 FBDBKF_00380 100.0 Morganella morganii S1 rcsB response regulator transcription factor RcsB
NLDBIP_02295 NLDBIP_02295 100.0 Morganella morganii S4 rcsB response regulator transcription factor RcsB
LHKJJB_03810 LHKJJB_03810 100.0 Morganella morganii S3 rcsB response regulator transcription factor RcsB
HKOGLL_03235 HKOGLL_03235 100.0 Morganella morganii S5 rcsB response regulator transcription factor RcsB
F4V73_RS06360 F4V73_RS06360 95.8 Morganella psychrotolerans rcsB response regulator transcription factor RcsB
PMI_RS08490 PMI_RS08490 89.4 Proteus mirabilis HI4320 rcsB response regulator transcription factor RcsB

Distribution of the homologs in the orthogroup group_433

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_433

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P58663 2.22e-135 382 89 0 210 1 rcsB Transcriptional regulatory protein RcsB Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q56127 3.48e-135 381 88 0 210 3 rcsB Transcriptional regulatory protein RcsB Salmonella typhi
P69410 3.93e-135 381 89 0 210 3 rcsB Transcriptional regulatory protein RcsB Shigella flexneri
P0DMC8 3.93e-135 381 89 0 210 1 rcsB Transcriptional regulatory protein RcsB Escherichia coli
P0DMC7 3.93e-135 381 89 0 210 1 rcsB Transcriptional regulatory protein RcsB Escherichia coli (strain K12)
P69408 3.93e-135 381 89 0 210 3 rcsB Transcriptional regulatory protein RcsB Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P69409 3.93e-135 381 89 0 210 3 rcsB Transcriptional regulatory protein RcsB Escherichia coli O157:H7
Q7CQM5 5.85e-19 85 27 2 205 1 ssrB Response regulator SsrB Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0AED6 1.11e-18 84 27 3 205 3 uvrY Response regulator UvrY Shigella flexneri
P0AED5 1.11e-18 84 27 3 205 1 uvrY Response regulator UvrY Escherichia coli (strain K12)
P66797 1.11e-18 84 27 3 205 3 uvrY Response regulator UvrY Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P66798 1.11e-18 84 27 3 205 3 uvrY Response regulator UvrY Escherichia coli O157:H7
Q7WZY4 1.21e-17 81 31 5 210 1 nreC Oxygen regulatory protein NreC Staphylococcus carnosus (strain TM300)
P26319 2.25e-17 80 31 2 209 3 fimZ Fimbriae Z protein Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q7A029 2.41e-17 80 30 3 210 3 nreC Oxygen regulatory protein NreC Staphylococcus aureus (strain MW2)
A8Z580 2.41e-17 80 30 3 210 3 nreC Oxygen regulatory protein NreC Staphylococcus aureus (strain USA300 / TCH1516)
Q6G6T0 2.41e-17 80 30 3 210 3 nreC Oxygen regulatory protein NreC Staphylococcus aureus (strain MSSA476)
Q6GE42 2.41e-17 80 30 3 210 3 nreC Oxygen regulatory protein NreC Staphylococcus aureus (strain MRSA252)
Q7A3U5 2.41e-17 80 30 3 210 3 nreC Oxygen regulatory protein NreC Staphylococcus aureus (strain N315)
Q99RN8 2.41e-17 80 30 3 210 3 nreC Oxygen regulatory protein NreC Staphylococcus aureus (strain Mu50 / ATCC 700699)
A6QJN1 2.41e-17 80 30 3 210 3 nreC Oxygen regulatory protein NreC Staphylococcus aureus (strain Newman)
Q5HDG5 2.41e-17 80 30 3 210 3 nreC Oxygen regulatory protein NreC Staphylococcus aureus (strain COL)
Q2YZ42 2.41e-17 80 30 3 210 3 nreC Oxygen regulatory protein NreC Staphylococcus aureus (strain bovine RF122 / ET3-1)
A5IVH2 2.41e-17 80 30 3 210 3 nreC Oxygen regulatory protein NreC Staphylococcus aureus (strain JH9)
Q2FVM7 2.41e-17 80 30 3 210 3 nreC Oxygen regulatory protein NreC Staphylococcus aureus (strain NCTC 8325 / PS 47)
Q2FEA6 2.41e-17 80 30 3 210 3 nreC Oxygen regulatory protein NreC Staphylococcus aureus (strain USA300)
A6U4C0 2.41e-17 80 30 3 210 3 nreC Oxygen regulatory protein NreC Staphylococcus aureus (strain JH1)
A7X623 2.41e-17 80 30 3 210 3 nreC Oxygen regulatory protein NreC Staphylococcus aureus (strain Mu3 / ATCC 700698)
Q5HLK6 4.56e-17 80 30 3 211 3 nreC Oxygen regulatory protein NreC Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)
Q4L8Q6 9.91e-17 79 30 3 210 3 nreC Oxygen regulatory protein NreC Staphylococcus haemolyticus (strain JCSC1435)
P0AGA9 2.45e-16 77 31 5 199 3 uhpA Transcriptional regulatory protein UhpA Shigella flexneri
P0AGA6 2.45e-16 77 31 5 199 1 uhpA Transcriptional regulatory protein UhpA Escherichia coli (strain K12)
P0AGA7 2.45e-16 77 31 5 199 3 uhpA Transcriptional regulatory protein UhpA Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AGA8 2.45e-16 77 31 5 199 3 uhpA Transcriptional regulatory protein UhpA Escherichia coli O157:H7
P27667 2.86e-16 77 30 5 203 3 uhpA Transcriptional regulatory protein UhpA Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P29904 5.21e-16 77 27 3 196 4 moxX Methanol utilization control regulatory protein MoxX Paracoccus denitrificans
Q8CN75 5.86e-16 77 29 3 211 3 nreC Oxygen regulatory protein NreC Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200)
P58664 2.12e-15 75 30 6 206 4 ygeK Uncharacterized response regulatory protein YgeK Escherichia coli O157:H7
P31802 4.46e-15 74 30 2 200 3 narP Nitrate/nitrite response regulator protein NarP Escherichia coli (strain K12)
O32197 1.53e-13 70 29 3 198 2 liaR Transcriptional regulatory protein LiaR Bacillus subtilis (strain 168)
P0AEL8 3.5e-13 69 27 2 206 3 fimZ Fimbriae Z protein Escherichia coli (strain K12)
P0AEL9 3.5e-13 69 27 2 206 3 fimZ Fimbriae Z protein Escherichia coli O157:H7
P9WGM5 6.78e-13 68 26 3 201 1 narL Probable transcriptional regulatory protein NarL Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WGM4 6.78e-13 68 26 3 201 3 narL Probable transcriptional regulatory protein NarL Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
Q46791 1.12e-12 66 35 3 137 1 ygeK Uncharacterized response regulatory protein YgeK Escherichia coli (strain K12)
Q7A0I0 1.45e-12 67 25 2 203 3 vraR Response regulator protein VraR Staphylococcus aureus (strain MW2)
Q6G850 1.45e-12 67 25 2 203 3 vraR Response regulator protein VraR Staphylococcus aureus (strain MSSA476)
Q6GFH3 1.45e-12 67 25 2 203 3 vraR Response regulator protein VraR Staphylococcus aureus (strain MRSA252)
Q7A4R9 1.45e-12 67 25 2 203 1 vraR Response regulator protein VraR Staphylococcus aureus (strain N315)
Q7A2Q1 1.45e-12 67 25 2 203 1 vraR Response regulator protein VraR Staphylococcus aureus (strain Mu50 / ATCC 700699)
P0C0Z1 1.45e-12 67 25 2 203 3 vraR Response regulator protein VraR Staphylococcus aureus (strain Mu3 / ATCC 700698)
Q51373 6.11e-12 65 24 3 202 3 gacA Response regulator GacA Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P0ACZ7 1.14e-11 65 26 4 191 1 evgA DNA-binding transcriptional activator EvgA Shigella flexneri
P0ACZ4 1.14e-11 65 26 4 191 1 evgA DNA-binding transcriptional activator EvgA Escherichia coli (strain K12)
P0ACZ5 1.14e-11 65 26 4 191 3 evgA DNA-binding transcriptional activator EvgA Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0ACZ6 1.14e-11 65 26 4 191 3 evgA DNA-binding transcriptional activator EvgA Escherichia coli O157:H7
P44845 1.74e-11 64 28 3 200 3 narP Nitrate/nitrite response regulator protein homolog Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q1M7A0 2.62e-11 64 24 3 203 3 mctR Transcriptional regulatory protein MctR Rhizobium johnstonii (strain DSM 114642 / LMG 32736 / 3841)
P95582 1.46e-10 62 22 3 204 3 gacA Response regulator GacA Pseudomonas viridiflava
P54662 1.66e-10 62 23 4 215 3 degU Transcriptional regulatory protein DegU Brevibacillus brevis
Q52376 1.73e-10 62 22 3 204 3 gacA Response regulator GacA Pseudomonas syringae pv. syringae (strain B728a)
P96686 4.94e-10 60 28 3 196 3 ydfI Transcriptional regulatory protein YdfI Bacillus subtilis (strain 168)
P13800 1.93e-09 59 24 4 215 1 degU Transcriptional regulatory protein DegU Bacillus subtilis (strain 168)
O34723 2.28e-09 58 25 4 197 1 desR Transcriptional regulatory protein DesR Bacillus subtilis (strain 168)
P39404 3.6e-09 58 25 4 186 1 bglJ Transcriptional activator protein BglJ Escherichia coli (strain K12)
O07528 8.49e-09 57 26 2 196 3 yhcZ Uncharacterized transcriptional regulatory protein YhcZ Bacillus subtilis (strain 168)
O07019 1.98e-08 55 24 3 195 3 yvfU Uncharacterized transcriptional regulatory protein YvfU Bacillus subtilis (strain 168)
P32967 3.79e-08 55 21 2 201 1 gacA Response regulator GacA Pseudomonas protegens (strain DSM 19095 / LMG 27888 / CFBP 6595 / CHA0)
Q8CNP9 4.04e-08 55 25 2 202 3 vraR Response regulator protein VraR Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200)
Q5HN50 4.04e-08 55 25 2 202 3 vraR Response regulator protein VraR Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)
P0AF31 1.04e-07 54 27 3 183 3 narL Nitrate/nitrite response regulator protein NarL Shigella flexneri
P0AF28 1.04e-07 54 27 3 183 1 narL Nitrate/nitrite response regulator protein NarL Escherichia coli (strain K12)
P0AF29 1.04e-07 54 27 3 183 3 narL Nitrate/nitrite response regulator protein NarL Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AF30 1.04e-07 54 27 3 183 3 narL Nitrate/nitrite response regulator protein NarL Escherichia coli O157:H7
Q4L7J5 1.66e-07 53 25 2 203 3 vraR Response regulator protein VraR Staphylococcus haemolyticus (strain JCSC1435)
P24908 1.81e-07 53 25 3 201 1 PA0034 Putative transcriptional regulator Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q5HEP0 2.62e-07 52 25 2 203 3 vraR Response regulator protein VraR Staphylococcus aureus (strain COL)
Q2FX09 2.62e-07 52 25 2 203 1 vraR Response regulator protein VraR Staphylococcus aureus (strain NCTC 8325 / PS 47)
P9WMF9 4.69e-07 52 26 8 204 1 devR DNA-binding transcriptional activator DevR/DosR Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WMF8 4.69e-07 52 26 8 204 2 devR DNA-binding transcriptional activator DevR/DosR Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
A8R3S7 3.1e-06 50 22 3 185 2 exaE Transcriptional activator protein ExaE Pseudomonas putida
Q49YS9 4.22e-06 49 23 2 202 3 vraR Response regulator protein VraR Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41)
P56644 1.15e-05 48 24 2 213 3 sgaR Probable transcriptional regulatory protein SgaR Hyphomicrobium methylovorum
P94439 1.26e-05 48 24 4 206 1 lnrK Transcriptional regulatory protein LnrK Bacillus subtilis (strain 168)
P55184 1.37e-05 48 24 4 191 3 yxjL Uncharacterized transcriptional regulatory protein YxjL Bacillus subtilis (strain 168)
P0AFB8 1.42e-05 48 35 2 84 1 glnG DNA-binding transcriptional regulator NtrC Escherichia coli (strain K12)
P0AFB9 1.42e-05 48 35 2 84 3 glnG DNA-binding transcriptional regulator NtrC Escherichia coli O157:H7
Q2LSL3 2.16e-05 48 32 1 89 3 cheB2 Protein-glutamate methylesterase/protein-glutamine glutaminase 2 Syntrophus aciditrophicus (strain SB)
P28787 2.86e-05 48 24 7 174 3 ntrC DNA-binding transcriptional regulator NtrC Proteus hauseri
P41789 3.13e-05 47 34 2 86 1 glnG DNA-binding transcriptional regulator NtrC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A4H2 4.14e-05 46 23 4 202 1 bvgA Virulence factors putative positive transcription regulator BvgA Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
P0A4H4 4.14e-05 46 23 4 202 3 bvgA Virulence factors putative positive transcription regulator BvgA Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253)
P0A4H3 4.14e-05 46 23 4 202 3 bvgA Virulence factors putative positive transcription regulator BvgA Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50)
Q7AKE4 6.85e-05 45 26 4 165 1 ramR Response regulator RamR Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
P03029 9.78e-05 46 33 2 86 1 ntrC DNA-binding transcriptional regulator NtrC Klebsiella pneumoniae
Q9K998 0.000397 43 22 2 149 3 dctR Probable C4-dicarboxylate response regulator DctR Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
P62640 0.000436 44 26 1 98 3 cheB3 Protein-glutamate methylesterase/protein-glutamine glutaminase 3 Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA)
Q9ZVD3 0.000598 43 31 5 132 3 ARR13 Putative two-component response regulator ARR13 Arabidopsis thaliana
P0ADD7 0.001 42 37 0 58 1 yjjQ Putative transcription factor YjjQ Escherichia coli (strain K12)
P0ADD8 0.001 42 37 0 58 4 yjjQ Uncharacterized protein YjjQ Escherichia coli O157:H7

  • Number of RefSeq hits:

General

Source Morganella morganii S2
Locus tag EHELCC_01165
Feature type CDS
Gene rcsB
Product response regulator transcription factor RcsB
Location 257685 - 258377 (strand: -1)
Length 693 (nucleotides) / 230 (amino acids)

Contig

Accession ZDB_213
Length 680219 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_433
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00072 Response regulator receiver domain
PF00196 Bacterial regulatory proteins, luxR family

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2197 Signal transduction mechanisms (T)
Transcription (K)
TK DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K07687 two-component system, NarL family, captular synthesis response regulator RcsB Two-component system
Biofilm formation - Escherichia coli
-

Virulence factor Annotation(s)

VF gene ID Protein VF ID Category
VFG049010 transcriptional regulator RcsB VF0571 Regulation

Protein Sequence

MPLSLNCCSKVTKSMNNLNVIIADDHPIVLFGIKKSLEQLETVNVVGEFEDSTSLINNLARLDADVLITDLSMPGDKYGDGITLIKYIKRHYPDLAIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPADLPKALASLQKGKKFTPDSVSKLLEKVNANGYGDKRLSPKESEVLRLFAEGHLVTEIARKLNRSIKTISSQKKSAMLKLGVDNDIALLNYLSSVTIDSHRDE

Flanking regions ( +/- flanking 50bp)

TATCGCTGACAAAAACAAAATGAAGGTGGATGAAGGTATCCGGGAAATTGATGCCATTGTCACTGAATTGCTGCAGCAAGGTAACCAAGAGTATGAATAACCTGAATGTTATTATCGCTGATGACCATCCTATTGTTCTGTTCGGGATAAAAAAATCTCTGGAACAGCTGGAAACGGTTAATGTTGTTGGTGAATTTGAAGATTCCACTTCACTCATCAATAACTTAGCACGTCTGGATGCGGATGTTCTGATCACTGACCTCTCCATGCCGGGAGATAAATACGGTGATGGCATCACGCTTATCAAGTATATCAAGCGCCATTATCCTGACCTGGCGATTATTGTGCTGACCATGAACAATAATCCGGCGATCCTCAGTGCCGTACTGGACCTCGATATCGAAGGGATCGTACTGAAGCAGGGTGCGCCGGCTGATCTGCCGAAAGCACTGGCCTCTTTGCAGAAAGGAAAGAAATTCACCCCTGACAGCGTTTCCAAACTGCTGGAAAAAGTGAATGCCAACGGGTACGGCGATAAGCGCCTGTCTCCGAAAGAGAGTGAGGTTCTGCGTCTGTTTGCCGAAGGGCATCTGGTCACTGAGATTGCGCGTAAACTGAACCGCAGTATCAAAACCATCAGCAGCCAGAAAAAATCCGCCATGCTGAAACTGGGTGTGGATAACGATATCGCTCTGCTGAATTACCTTTCGTCTGTCACTATCGACAGCCACAGAGACGAGTAATCCGGACACGTTTTACAGTATTGATACAAAACCGCCATTCATCTGAACGG