VFG049010
Help to interpret the results
Three outputs have been generated:
General: this result contains the description and frequency of the selected Virulence factors VFG049010, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Virulence factors
within the database. 7 occurences are identified.
The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Virulence factor(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Virulence factors has been clustered.
In red the Virulence factors with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Virulence factors prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Virulence factors.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Virulence factors prediction.
Description
Protein |
transcriptional regulator RcsB |
VF ID |
VF0571 |
Category |
Regulation |
Protein ID |
WP_004103995 |
Function |
RcsB combined with the unstable auxiliary regulator RcsA to bind to an RcsAB box in the promoter region to upregulate the cps genes expression |
Vf_category_id |
VFC0301 |
Occurence in the database
VFG049010 is associated with 7 different proteins (see tab "Protein list" and "Profile") |
The 7 proteins are classified into 1 different orthogroup(s)
|
# |
Orthogroup |
Locus |
Start |
Stop |
S. |
Gene |
Product |
Organism |
0 |
group_433 |
FBDBKF_00380 |
50491 |
51183 |
1 |
rcsB |
response regulator transcription factor RcsB |
Morganella morganii S1 |
1 |
group_433 |
EHELCC_01165 |
257685 |
258377 |
-1 |
rcsB |
response regulator transcription factor RcsB |
Morganella morganii S2 |
2 |
group_433 |
NLDBIP_02295 |
421759 |
422451 |
1 |
rcsB |
response regulator transcription factor RcsB |
Morganella morganii S4 |
3 |
group_433 |
LHKJJB_03810 |
29000 |
29692 |
1 |
rcsB |
response regulator transcription factor RcsB |
Morganella morganii S3 |
4 |
group_433 |
HKOGLL_03235 |
257890 |
258582 |
-1 |
rcsB |
response regulator transcription factor RcsB |
Morganella morganii S5 |
5 |
group_433 |
F4V73_RS06360 |
1322715 |
1323365 |
1 |
rcsB |
response regulator transcription factor RcsB |
Morganella psychrotolerans |
6 |
group_433 |
PMI_RS08490 |
1847715 |
1848371 |
1 |
rcsB |
response regulator transcription factor RcsB |
Proteus mirabilis HI4320 |