Homologs in group_547

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_01305 FBDBKF_01305 100.0 Morganella morganii S1 tssF type VI secretion system baseplate subunit TssF
NLDBIP_03220 NLDBIP_03220 100.0 Morganella morganii S4 tssF type VI secretion system baseplate subunit TssF
LHKJJB_04735 LHKJJB_04735 100.0 Morganella morganii S3 tssF type VI secretion system baseplate subunit TssF
HKOGLL_02310 HKOGLL_02310 100.0 Morganella morganii S5 tssF type VI secretion system baseplate subunit TssF
F4V73_RS02365 F4V73_RS02365 74.7 Morganella psychrotolerans tssF type VI secretion system baseplate subunit TssF
PMI_RS03670 PMI_RS03670 49.7 Proteus mirabilis HI4320 tssF type VI secretion system baseplate subunit TssF

Distribution of the homologs in the orthogroup group_547

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_547

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q9I744 2.17e-48 181 27 24 642 1 tssF1 Type VI secretion system component TssF1 Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

  • Number of RefSeq hits:

General

Source Morganella morganii S2
Locus tag EHELCC_00240
Feature type CDS
Gene tssF
Product type VI secretion system baseplate subunit TssF
Location 55510 - 57291 (strand: -1)
Length 1782 (nucleotides) / 593 (amino acids)

Contig

Accession ZDB_213
Length 680219 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_547
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF05947 Type VI secretion system, TssF

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3519 Intracellular trafficking, secretion, and vesicular transport (U) U Type VI protein secretion system component VasA

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K11896 type VI secretion system protein ImpG - -

Protein Sequence

MPRNPRFSDELEYLQLLEDTVARHKPHLVNFLAEKSSDPDVLRLLEGFAYLSASLRSQIERQFPELTNSLVTMLWPSYARPFPSMTVMQFTPSPALRLPVSVPAGTLFESQQITLDESDAEEDVLHQMTCHFTQSRDLRVMPFTVSSVTADRQSVTVSFSLPQPVRLSDSGLPELQFYLGGDDYTAHELYFLLSHAVSGATLTTEKHTYQAENFAVSPAGFSREDALLPYPRNSYEGHRLLQEYFSFPRAFLFLNIEGLDDIPAVMSGDHFSLTIHFSRPLPPAADINNDSILINCVPAANLFPMESEAIELDGRQSEYPLSPGFAHPGSYDIFSVTSVDGLRRSGSQPVKMTHYTQFESFHHQDPVNKGDDEQYYRLRTLPSPDDGGFRHRISFVRSNEPALVGCDETISVSLLCTNRDVAGYLRTGSVTRCTEPLPDIAAVSNIMKPTQTLRPLLDHSLHWSVLTNLSLNYQSLLSLDALRELLQLYDLTSVFHQQTARQAQKCLDALVSMTTQPAEYLYRGLPVRGLKSTLSVYQSAFSSEGGLYLFCSVIAHFFGLYTSVNTFHELEVINMDNREVYLWPAKINHTVLC

Flanking regions ( +/- flanking 50bp)

TATGCAGATGGACAGTCACCGGCACTACAGACTGAAGCAGGCCTGACAGAATGCCCCGTAATCCCCGTTTTTCTGATGAACTTGAATATCTGCAACTGCTGGAAGATACCGTTGCGCGTCACAAGCCGCATCTGGTTAATTTTCTGGCAGAAAAAAGCTCAGATCCGGATGTGCTGCGACTGCTGGAAGGTTTTGCTTATCTGTCTGCCTCCCTGCGCAGTCAGATTGAACGCCAGTTTCCGGAACTGACCAACAGTCTGGTTACGATGCTGTGGCCCAGTTATGCCCGGCCGTTTCCGTCAATGACGGTAATGCAGTTCACTCCCTCTCCCGCCCTGCGTCTGCCTGTTTCGGTACCGGCGGGAACATTGTTTGAGAGTCAGCAAATCACGCTGGATGAAAGTGATGCGGAAGAAGATGTTCTGCATCAGATGACCTGCCATTTTACGCAGAGCCGCGACCTGCGCGTTATGCCGTTTACGGTTTCCTCGGTGACCGCTGACAGGCAGTCGGTGACGGTTTCATTTTCACTGCCGCAGCCGGTCCGGTTATCAGATTCCGGCCTGCCGGAACTGCAGTTTTATCTCGGCGGGGATGATTACACCGCGCATGAACTCTATTTTCTGCTCAGTCACGCAGTGTCAGGGGCAACACTGACCACGGAAAAGCACACGTATCAGGCGGAAAATTTTGCCGTGTCACCGGCCGGTTTCAGCCGTGAGGATGCCCTGCTGCCCTACCCGAGAAACAGTTATGAAGGGCATCGCCTGCTGCAGGAATACTTCAGTTTTCCGCGCGCTTTTCTGTTTCTGAATATTGAAGGGCTTGATGATATCCCGGCGGTGATGTCCGGCGATCATTTTTCCCTGACCATCCACTTTTCCCGTCCGCTGCCGCCGGCTGCGGATATTAACAATGACAGTATCCTGATCAACTGTGTTCCGGCGGCTAACCTGTTTCCGATGGAAAGTGAAGCCATTGAGCTGGATGGCAGACAAAGTGAGTACCCGCTGAGTCCGGGCTTTGCCCATCCCGGCAGTTACGACATTTTTTCTGTCACCAGTGTGGACGGACTGCGCCGCAGCGGCAGCCAGCCGGTCAAAATGACACATTACACACAGTTTGAAAGTTTCCATCATCAGGATCCGGTCAATAAAGGTGATGATGAGCAGTATTACCGGCTGCGTACACTGCCGTCACCTGATGACGGCGGGTTCCGTCACCGGATTTCCTTTGTCCGCAGTAATGAACCGGCGCTGGTCGGCTGTGATGAAACGATTTCCGTTTCTCTGCTCTGCACCAACCGGGATGTGGCCGGTTATCTGCGGACAGGTTCTGTTACCCGCTGCACAGAGCCGCTGCCGGATATTGCGGCGGTCAGCAATATAATGAAACCGACACAGACACTGCGCCCGCTGCTGGATCACTCCCTGCACTGGTCGGTGCTGACTAACCTGTCGCTGAATTATCAGTCCCTGCTGAGCCTGGACGCACTGCGCGAACTGCTGCAGCTTTACGATCTGACATCGGTATTCCACCAGCAGACTGCCCGTCAGGCACAAAAATGCCTGGATGCCCTGGTGAGCATGACCACACAGCCTGCCGAATATCTGTACCGGGGATTACCGGTGCGCGGGCTGAAATCCACCTTATCTGTTTATCAGAGTGCGTTCTCCTCCGAGGGCGGGCTCTATTTGTTCTGTTCCGTTATTGCTCACTTTTTCGGGCTCTATACCAGTGTGAATACCTTTCATGAGCTGGAAGTGATCAATATGGATAACCGGGAAGTGTATTTATGGCCGGCGAAAATCAATCACACCGTTCTGTGCTGACATCTCCTGTCAGCGACGGCACTGCCGCCATGACGGAGTATGACTTTTAT