Homologs in group_563

Help

6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_01450 FBDBKF_01450 100.0 Morganella morganii S1 rseB sigma-E factor regulatory protein RseB
NLDBIP_03365 NLDBIP_03365 100.0 Morganella morganii S4 rseB sigma-E factor regulatory protein RseB
LHKJJB_04880 LHKJJB_04880 100.0 Morganella morganii S3 rseB sigma-E factor regulatory protein RseB
HKOGLL_02165 HKOGLL_02165 100.0 Morganella morganii S5 rseB sigma-E factor regulatory protein RseB
F4V73_RS01955 F4V73_RS01955 88.3 Morganella psychrotolerans rseB sigma-E factor regulatory protein RseB
PMI_RS09340 PMI_RS09340 54.1 Proteus mirabilis HI4320 rseB sigma-E factor regulatory protein RseB

Distribution of the homologs in the orthogroup group_563

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_563

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AFY1 2.83e-105 313 46 3 319 3 rseB Sigma-E factor regulatory protein RseB Shigella flexneri
P0AFX9 2.83e-105 313 46 3 319 1 rseB Sigma-E factor regulatory protein RseB Escherichia coli (strain K12)
P0AFY0 2.83e-105 313 46 3 319 3 rseB Sigma-E factor regulatory protein RseB Escherichia coli O157:H7
D0ZSY7 1.1e-103 309 45 3 316 3 rseB Sigma-E factor regulatory protein RseB Salmonella typhimurium (strain 14028s / SGSC 2262)
P44792 1.83e-55 185 32 4 294 3 rseB Sigma-E factor regulatory protein RseB Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P38108 2.6e-14 75 25 9 302 1 mucB Sigma factor AlgU regulatory protein MucB Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

  • Number of RefSeq hits:

General

Source Morganella morganii S2
Locus tag EHELCC_00095
Feature type CDS
Gene rseB
Product sigma-E factor regulatory protein RseB
Location 18865 - 19818 (strand: 1)
Length 954 (nucleotides) / 317 (amino acids)

Contig

Accession ZDB_213
Length 680219 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_563
Orthogroup size 7
N. genomes 7

Actions

Genomic region

Domains

PF03888 MucB/RseB N-terminal domain
PF17188 MucB/RseB C-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3026 Signal transduction mechanisms (T) T RseB, negative regulator of sigma E activity

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03598 sigma-E factor negative regulatory protein RseB - -

Protein Sequence

MKRIWLSVAFLTGSLLLAAPASAQQSAEALLQNMGNASRTLSYELSFITISPKGITPVRYRYAVMDGQPVAQIMQMDSSRREIVQRGQEISYYEPGLDSFSLSGNHIVDYLPSIIFADFSALKAYYNFIDVGRIHIGDHPGRVVRITSKDNSRYNYIVVADEETGLPLQVDLLDQNNVSLEQFRVVSASVNNSSVTEALKAVQSVTMPPVLAIPQPEKIKFDWDVMRLPNGFKEMTRNRRQVGEQEWVETVMFSDGLFSFSVNVAKAVKTPENQQTMRQGSRTLYTIRKGDNEITVFGELPPATARQIADGVTFSGG

Flanking regions ( +/- flanking 50bp)

ACAGCCACCCCGGAACAGGGTCGCGTGTCTTCACAACCACAGCAGTAGTAATGAAACGAATCTGGTTATCCGTTGCTTTTCTGACGGGCAGCCTGTTACTCGCAGCACCGGCCTCAGCACAACAAAGTGCTGAGGCGTTGCTGCAGAATATGGGTAACGCTTCCCGCACACTCAGTTATGAACTCTCTTTTATCACCATCTCCCCGAAAGGTATCACGCCGGTCCGTTACCGCTATGCGGTTATGGATGGTCAGCCTGTCGCCCAGATTATGCAGATGGACAGCTCCCGCCGGGAAATTGTCCAGCGTGGTCAGGAGATCAGCTACTATGAGCCGGGGCTGGATTCATTCAGCCTGAGCGGTAATCACATTGTTGATTATCTGCCGTCGATTATTTTCGCGGACTTCAGTGCGCTGAAAGCCTATTACAATTTTATTGATGTCGGACGGATCCATATCGGCGATCATCCGGGACGGGTCGTGCGCATCACCTCAAAAGATAACTCACGTTACAATTATATTGTGGTCGCAGATGAAGAAACCGGCCTGCCGTTACAGGTGGACCTGCTGGATCAGAATAATGTCTCACTCGAACAGTTCCGCGTGGTTTCTGCTTCCGTGAATAACAGCAGTGTGACAGAAGCACTGAAAGCGGTACAGTCTGTCACTATGCCACCGGTACTGGCTATTCCGCAGCCGGAAAAGATCAAATTTGACTGGGATGTAATGCGTCTGCCTAACGGCTTTAAAGAAATGACCCGCAACCGCCGCCAGGTGGGGGAACAGGAATGGGTGGAGACGGTCATGTTCAGCGATGGCCTGTTCTCATTTTCCGTGAATGTCGCCAAAGCGGTGAAGACACCAGAAAATCAACAGACAATGCGCCAGGGTTCGCGTACGCTGTACACCATACGTAAAGGTGATAATGAGATCACTGTCTTTGGCGAACTGCCCCCGGCGACAGCCCGGCAGATAGCTGACGGTGTGACATTCAGCGGAGGTTAATATGGTAAAAGAGTGGGCAACCGTGGTGCGCTGGCAGGACGGGCGTGCGG