VFG012585


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Virulence factors VFG012585, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Virulence factors within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Virulence factor(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Virulence factors has been clustered.
In red the Virulence factors with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Virulence factors prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Virulence factors.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Virulence factors prediction.

Description

Protein iron/manganese ABC transporter permease subunit SitC
VF ID VF1116
Category Nutritional/Metabolic factor
Protein ID WP_001101723
Vf_category_id VFC0272

Occurence in the database

VFG012585 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1815 FBDBKF_13455 69492 70367 1 znuB ABC-type Mn2+/Zn2+ transport system, permease component Morganella morganii S1
1 group_1815 EHELCC_08640 204824 205699 -1 znuB ABC-type Mn2+/Zn2+ transport system, permease component Morganella morganii S2
2 group_1815 NLDBIP_08965 204824 205699 -1 znuB ABC-type Mn2+/Zn2+ transport system, permease component Morganella morganii S4
3 group_1815 LHKJJB_05300 51460 52335 1 znuB ABC-type Mn2+/Zn2+ transport system, permease component Morganella morganii S3
4 group_1815 HKOGLL_05615 189415 190290 -1 znuB ABC-type Mn2+/Zn2+ transport system, permease component Morganella morganii S5
5 group_1815 F4V73_RS03310 705607 706482 -1 metal ABC transporter permease Morganella psychrotolerans
6 group_1815 PMI_RS04980 1090271 1091182 -1 metal ABC transporter permease Proteus mirabilis HI4320