VFG000077
Help to interpret the results
Three outputs have been generated:
General: this result contains the description and frequency of the selected Virulence factors VFG000077, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Virulence factors
within the database. 7 occurences are identified.
The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Virulence factor(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Virulence factors has been clustered.
In red the Virulence factors with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Virulence factors prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Virulence factors.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Virulence factors prediction.
Description
Protein |
ATP-dependent Clp protease proteolytic subunit |
VF ID |
VF0074 |
Category |
Stress survival |
Protein ID |
NP_465991 |
Characteristics |
21.6 kDa protein belongs to a family of proteases highly conserved in prokaryotes and eukaryotes |
Function |
Serine protease involved in proteolysis and is required for growth under stress conditions |
Vf_category_id |
VFC0282 |
Occurence in the database
VFG000077 is associated with 7 different proteins (see tab "Protein list" and "Profile") |
The 7 proteins are classified into 1 different orthogroup(s)
|
# |
Orthogroup |
Locus |
Start |
Stop |
S. |
Gene |
Product |
Organism |
0 |
group_2111 |
FBDBKF_15870 |
24660 |
25280 |
1 |
clpP |
ATP-dependent Clp endopeptidase proteolytic subunit ClpP |
Morganella morganii S1 |
1 |
group_2111 |
EHELCC_18470 |
12099 |
12719 |
1 |
clpP |
ATP-dependent Clp endopeptidase proteolytic subunit ClpP |
Morganella morganii S2 |
2 |
group_2111 |
NLDBIP_17305 |
12099 |
12719 |
1 |
clpP |
ATP-dependent Clp endopeptidase proteolytic subunit ClpP |
Morganella morganii S4 |
3 |
group_2111 |
LHKJJB_17355 |
43469 |
44089 |
-1 |
clpP |
ATP-dependent Clp endopeptidase proteolytic subunit ClpP |
Morganella morganii S3 |
4 |
group_2111 |
HKOGLL_17040 |
12099 |
12719 |
1 |
clpP |
ATP-dependent Clp endopeptidase proteolytic subunit ClpP |
Morganella morganii S5 |
5 |
group_2111 |
F4V73_RS16440 |
106354 |
106974 |
-1 |
clpP |
ATP-dependent Clp endopeptidase proteolytic subunit ClpP |
Morganella psychrotolerans |
6 |
group_2111 |
PMI_RS00555 |
143003 |
143626 |
1 |
clpP |
ATP-dependent Clp endopeptidase proteolytic subunit ClpP |
Proteus mirabilis HI4320 |