VFG000077


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Virulence factors VFG000077, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Virulence factors within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Virulence factor(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Virulence factors has been clustered.
In red the Virulence factors with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Virulence factors prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Virulence factors.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Virulence factors prediction.

Description

Protein ATP-dependent Clp protease proteolytic subunit
VF ID VF0074
Category Stress survival
Protein ID NP_465991
Characteristics 21.6 kDa protein belongs to a family of proteases highly conserved in prokaryotes and eukaryotes
Function Serine protease involved in proteolysis and is required for growth under stress conditions
Vf_category_id VFC0282

Occurence in the database

VFG000077 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2111 FBDBKF_15870 24660 25280 1 clpP ATP-dependent Clp endopeptidase proteolytic subunit ClpP Morganella morganii S1
1 group_2111 EHELCC_18470 12099 12719 1 clpP ATP-dependent Clp endopeptidase proteolytic subunit ClpP Morganella morganii S2
2 group_2111 NLDBIP_17305 12099 12719 1 clpP ATP-dependent Clp endopeptidase proteolytic subunit ClpP Morganella morganii S4
3 group_2111 LHKJJB_17355 43469 44089 -1 clpP ATP-dependent Clp endopeptidase proteolytic subunit ClpP Morganella morganii S3
4 group_2111 HKOGLL_17040 12099 12719 1 clpP ATP-dependent Clp endopeptidase proteolytic subunit ClpP Morganella morganii S5
5 group_2111 F4V73_RS16440 106354 106974 -1 clpP ATP-dependent Clp endopeptidase proteolytic subunit ClpP Morganella psychrotolerans
6 group_2111 PMI_RS00555 143003 143626 1 clpP ATP-dependent Clp endopeptidase proteolytic subunit ClpP Proteus mirabilis HI4320