PF21999


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF21999, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF21999
Description DNA polymerase-iota, thumb domain

Occurence in the database

PF21999 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2023 FBDBKF_15180 46155 47210 1 dinB DNA polymerase IV Morganella morganii S1
1 group_2023 EHELCC_11065 37696 38751 -1 dinB DNA polymerase IV Morganella morganii S2
2 group_2023 NLDBIP_11410 37696 38751 -1 dinB DNA polymerase IV Morganella morganii S4
3 group_2023 LHKJJB_11270 37696 38751 -1 dinB DNA polymerase IV Morganella morganii S3
4 group_2023 HKOGLL_09880 37696 38751 -1 dinB DNA polymerase IV Morganella morganii S5
5 group_2023 F4V73_RS12265 37187 38242 -1 dinB DNA polymerase IV Morganella psychrotolerans
6 group_2023 PMI_RS01735 410577 411632 1 dinB DNA polymerase IV Proteus mirabilis HI4320