PF21760


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF21760, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF21760
Description Protein translocase subunit SecDF, P1 domain, N-terminal

Occurence in the database

PF21760 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2259 FBDBKF_17395 9342 11156 -1 secD Preprotein translocase subunit SecD Morganella morganii S1
1 group_2259 EHELCC_17290 9342 11156 -1 secD Preprotein translocase subunit SecD Morganella morganii S2
2 group_2259 NLDBIP_17905 31640 33454 1 secD Preprotein translocase subunit SecD Morganella morganii S4
3 group_2259 LHKJJB_17825 31638 33452 1 secD Preprotein translocase subunit SecD Morganella morganii S3
4 group_2259 HKOGLL_17835 31638 33452 1 secD Preprotein translocase subunit SecD Morganella morganii S5
5 group_2259 F4V73_RS16570 133045 134892 -1 secD protein translocase subunit SecD Morganella psychrotolerans
6 group_2259 PMI_RS00375 105962 107809 1 secD protein translocase subunit SecD Proteus mirabilis HI4320