Homologs in group_2259

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
EHELCC_17290 EHELCC_17290 100.0 Morganella morganii S2 secD Preprotein translocase subunit SecD
NLDBIP_17905 NLDBIP_17905 100.0 Morganella morganii S4 secD Preprotein translocase subunit SecD
LHKJJB_17825 LHKJJB_17825 100.0 Morganella morganii S3 secD Preprotein translocase subunit SecD
HKOGLL_17835 HKOGLL_17835 100.0 Morganella morganii S5 secD Preprotein translocase subunit SecD
F4V73_RS16570 F4V73_RS16570 94.7 Morganella psychrotolerans secD protein translocase subunit SecD
PMI_RS00375 PMI_RS00375 84.1 Proteus mirabilis HI4320 secD protein translocase subunit SecD

Distribution of the homologs in the orthogroup group_2259

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2259

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AG92 0.0 960 78 0 604 3 secD Protein translocase subunit SecD Shigella flexneri
P0AG90 0.0 960 78 0 604 1 secD Protein translocase subunit SecD Escherichia coli (strain K12)
P0AG91 0.0 960 78 0 604 3 secD Protein translocase subunit SecD Escherichia coli O157:H7
Q9ZFF8 0.0 955 77 0 604 3 secD Protein translocase subunit SecD Salmonella choleraesuis (strain SC-B67)
E9RGS3 0.0 764 63 1 607 1 secD Protein translocase subunit SecD Vibrio alginolyticus
P44591 0.0 729 59 1 605 3 secD Protein translocase subunit SecD Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q9HXI1 1.63e-180 527 47 9 619 3 secD Protein translocase subunit SecD Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
E6W4K8 2.52e-112 348 40 11 532 3 secD Protein translocase subunit SecD Desulfurispirillum indicum (strain ATCC BAA-1389 / DSM 22839 / S5)
A0LCK9 1.5e-109 342 38 7 516 3 secD Protein translocase subunit SecD Magnetococcus marinus (strain ATCC BAA-1437 / JCM 17883 / MC-1)
E4TJ18 4.35e-108 337 38 8 512 3 secD Protein translocase subunit SecD Calditerrivibrio nitroreducens (strain DSM 19672 / NBRC 101217 / Yu37-1)
A0LHM9 6.61e-99 314 36 8 523 3 secD Protein translocase subunit SecD Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB)
Q1RIN3 1.54e-92 297 37 7 487 3 secD Protein translocase subunit SecD Rickettsia bellii (strain RML369-C)
B5YIG9 9.38e-89 288 35 12 531 3 secD Protein translocase subunit SecD Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87)
Q92H77 6.8e-86 280 37 8 492 3 secD Protein translocase subunit SecD Rickettsia conorii (strain ATCC VR-613 / Malish 7)
Q4UKW3 2.02e-85 278 36 8 492 3 secD Protein translocase subunit SecD Rickettsia felis (strain ATCC VR-1525 / URRWXCal2)
Q68WF2 8.82e-85 277 37 9 500 3 secD Protein translocase subunit SecD Rickettsia typhi (strain ATCC VR-144 / Wilmington)
C7JGJ8 1.37e-84 276 35 8 514 3 secD Protein translocase subunit SecD Acetobacter pasteurianus (strain NBRC 105184 / IFO 3283-01)
O67102 3.84e-84 275 34 10 496 3 secD Protein translocase subunit SecD Aquifex aeolicus (strain VF5)
Q9ZJ66 6.31e-83 272 35 10 515 3 secD Protein translocase subunit SecD Helicobacter pylori (strain J99 / ATCC 700824)
B2KBZ1 5.06e-82 268 39 5 405 3 secD Protein translocase subunit SecD Elusimicrobium minutum (strain Pei191)
O26074 3.7e-81 268 35 9 496 3 secD Protein translocase subunit SecD Helicobacter pylori (strain ATCC 700392 / 26695)
Q1IVE9 2.9e-80 265 33 9 532 3 secD Protein translocase subunit SecD Koribacter versatilis (strain Ellin345)
B1H0M4 2.27e-79 261 38 6 419 3 secD Protein translocase subunit SecD Endomicrobium trichonymphae
Q9ZCW8 2.76e-79 263 36 10 495 3 secD Protein translocase subunit SecD Rickettsia prowazekii (strain Madrid E)
D2RLC8 1.58e-77 254 38 6 396 3 secD Protein translocase subunit SecD Acidaminococcus fermentans (strain ATCC 25085 / DSM 20731 / CCUG 9996 / CIP 106432 / VR4)
O33517 1.73e-75 253 35 14 531 3 secD Protein translocase subunit SecD Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003)
C7NC37 9.69e-73 242 38 6 394 3 secD Protein translocase subunit SecD Leptotrichia buccalis (strain ATCC 14201 / DSM 1135 / JCM 12969 / NCTC 10249 / C-1013-b)
B8E2N3 5.62e-72 239 37 5 380 3 secD Protein translocase subunit SecD Dictyoglomus turgidum (strain DSM 6724 / Z-1310)
Q55610 2.49e-65 224 35 10 408 3 secD Protein translocase subunit SecD Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
D0MIN4 8.86e-65 226 43 3 292 3 secD Protein translocase subunit SecD Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10)
D0MIN4 1.55e-17 90 33 5 181 3 secD Protein translocase subunit SecD Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10)
Q2IKX9 2.17e-64 225 40 10 367 3 secD Protein translocase subunit SecD Anaeromyxobacter dehalogenans (strain 2CP-C)
Q2IKX9 7.97e-14 78 31 3 168 3 secD Protein translocase subunit SecD Anaeromyxobacter dehalogenans (strain 2CP-C)
D1AMK9 5.25e-63 216 35 6 373 3 secD Protein translocase subunit SecD Sebaldella termitidis (strain ATCC 33386 / NCTC 11300)
O83425 3.94e-60 213 33 11 436 3 secD Protein translocase subunit SecD Treponema pallidum (strain Nichols)
Q7VCH3 3.42e-59 208 34 9 422 3 secD Protein translocase subunit SecD Prochlorococcus marinus (strain SARG / CCMP1375 / SS120)
Q5SKE6 3.66e-57 208 39 8 381 1 secDF Protein translocase subunit SecDF Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)
B0CEA7 1.29e-56 201 34 11 407 3 secD Protein translocase subunit SecD Acaryochloris marina (strain MBIC 11017)
D1CDJ5 3.32e-56 201 33 10 428 3 secD Protein translocase subunit SecD Thermobaculum terrenum (strain ATCC BAA-798 / CCMEE 7001 / YNP1)
P0C117 2.26e-54 201 35 5 358 3 secDF Protein translocase subunit SecDF Brucella abortus biovar 1 (strain 9-941)
P0C117 3.57e-05 50 23 3 159 3 secDF Protein translocase subunit SecDF Brucella abortus biovar 1 (strain 9-941)
Q2YNM0 2.26e-54 201 35 5 358 3 secDF Protein translocase subunit SecDF Brucella abortus (strain 2308)
Q2YNM0 3.57e-05 50 23 3 159 3 secDF Protein translocase subunit SecDF Brucella abortus (strain 2308)
A9BG79 4.05e-53 191 33 12 401 3 secD Protein translocase subunit SecD Petrotoga mobilis (strain DSM 10674 / SJ95)
D2BGI6 1.4e-52 189 33 11 444 3 secD Protein translocase subunit SecD Dehalococcoides mccartyi (strain VS)
E8N5I8 9.98e-52 187 32 8 410 3 secD Protein translocase subunit SecD Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 / UNI-1)
O51596 5.21e-51 188 30 11 431 3 secD Protein translocase subunit SecD Borreliella burgdorferi (strain ATCC 35210 / DSM 4680 / CIP 102532 / B31)
O32047 2.31e-46 177 31 9 388 1 secDF Protein translocase subunit SecDF Bacillus subtilis (strain 168)
C1A8P2 1.6e-41 161 29 13 527 3 secD Protein translocase subunit SecD Gemmatimonas aurantiaca (strain DSM 14586 / JCM 11422 / NBRC 100505 / T-27)
C8WQG7 4.56e-38 149 31 11 376 3 secD Protein translocase subunit SecD Alicyclobacillus acidocaldarius subsp. acidocaldarius (strain ATCC 27009 / DSM 446 / BCRC 14685 / JCM 5260 / KCTC 1825 / NBRC 15652 / NCIMB 11725 / NRRL B-14509 / 104-IA)
Q53955 1.69e-20 99 27 4 226 3 secD Protein translocase subunit SecD Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
P9WGP1 8.64e-18 90 27 5 308 1 secD Protein translocase subunit SecD Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WGP0 8.64e-18 90 27 5 308 3 secD Protein translocase subunit SecD Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P38387 5.67e-17 88 27 8 369 3 secD Protein translocase subunit SecD Mycobacterium leprae (strain TN)
Q8TWM4 2.32e-11 69 24 16 390 3 secD Protein-export membrane protein SecD Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938)
Q8U4B4 2.79e-11 69 27 5 206 3 secD Protein-export membrane protein SecD Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
C5A3H4 1.51e-10 67 28 2 175 3 secD Protein-export membrane protein SecD Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3)
B0CEA6 7.51e-10 64 27 3 162 3 secF Protein translocase subunit SecF Acaryochloris marina (strain MBIC 11017)
E6W4K9 1.08e-09 63 29 4 164 3 secF Protein translocase subunit SecF Desulfurispirillum indicum (strain ATCC BAA-1389 / DSM 22839 / S5)
A8GQT5 1.17e-08 60 25 5 177 2 secF Protein translocase subunit SecF Rickettsia rickettsii (strain Sheila Smith)
Q57575 1.45e-08 60 29 4 182 3 secD Protein-export membrane protein SecD Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
A0LCK8 1.62e-08 60 24 9 309 3 secF Protein translocase subunit SecF Magnetococcus marinus (strain ATCC BAA-1437 / JCM 17883 / MC-1)
A8EXI0 9.36e-08 57 26 3 167 3 secF Protein translocase subunit SecF Rickettsia canadensis (strain McKiel)
E1RHR1 8.81e-07 55 23 19 489 3 secD Protein-export membrane protein SecD Methanolacinia petrolearia (strain DSM 11571 / OCM 486 / SEBR 4847)
O26937 2.13e-06 53 24 14 382 3 secD Protein-export membrane protein SecD Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
Q58650 5.7e-06 52 30 5 136 3 secF Protein-export membrane protein SecF Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q55611 9.67e-06 51 22 3 168 3 secF Protein translocase subunit SecF Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
Q1IVE8 2.03e-05 50 23 3 157 3 secF Protein translocase subunit SecF Koribacter versatilis (strain Ellin345)
O06079 2.34e-05 51 28 1 116 3 mmpL11 Probable transport protein MmpL11 Mycobacterium leprae (strain TN)
B1XQC0 2.57e-05 50 24 3 166 3 secF Protein translocase subunit SecF Picosynechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6)
B2KBZ0 3.61e-05 49 23 9 253 3 secF Protein translocase subunit SecF Elusimicrobium minutum (strain Pei191)
O26073 0.000129 48 24 4 161 3 secF Protein translocase subunit SecF Helicobacter pylori (strain ATCC 700392 / 26695)
C5A3H3 0.000133 48 25 4 143 3 secF Protein-export membrane protein SecF Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3)
Q9ZJ65 0.00014 48 24 4 161 3 secF Protein translocase subunit SecF Helicobacter pylori (strain J99 / ATCC 700824)
Q18FQ8 0.000284 47 23 14 380 3 secD Protein-export membrane protein SecD Haloquadratum walsbyi (strain DSM 16790 / HBSQ001)
D0MIN3 0.000614 45 20 5 177 3 secF Protein translocase subunit SecF Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10)
D1CDJ6 0.000798 45 19 3 167 3 secF Protein translocase subunit SecF Thermobaculum terrenum (strain ATCC BAA-798 / CCMEE 7001 / YNP1)

  • Number of RefSeq hits:

General

Source Morganella morganii S1
Locus tag FBDBKF_17395
Feature type CDS
Gene secD
Product Preprotein translocase subunit SecD
Location 9342 - 11156 (strand: -1)
Length 1815 (nucleotides) / 604 (amino acids)

Contig

Accession contig_28
Length 42791 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2259
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF02355 Protein export membrane protein
PF07549 SecD/SecF GG Motif
PF13721 SecD export protein N-terminal TM region
PF21760 Protein translocase subunit SecDF, P1 domain, N-terminal
PF22599 SecDF, P1 head subdomain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0342 Intracellular trafficking, secretion, and vesicular transport (U) U Preprotein translocase subunit SecD

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03072 preprotein translocase subunit SecD Protein export
Bacterial secretion system		 -

Protein Sequence

MLIAAILIGLLYALPNLYGEDPAVQITGARGTAANEQTLDQVRTILEKDQIASKSVALENGVILARFSNPDIQLRAREELVKGLGEQYVVALNLAPATPKWLTAVGGEPMKLGLDLRGGVHFLMEVDMETALGKLQEQNLDGIRSLLRENSIPFASVRKSADYGVEVRFRDDASRSEASSLLSKRLRDLVFKDGTDNTLTAVMSDQRLSEARSYAVMQNITILRNRVNQLGVAEPLVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNGAVDPAAIEAGRIPGDTEVKYTRDGRKVALYKRVILTGDHITDSTSQSDEYGQPQVSISLDSAGGNTMSDFTKDNLYKPMATLFVEYKDSGRKDAAGRSILEKNEEVINIANIQSRLGSNFRITGIDNANEARQLSLLLRAGALIAPIQIVEERTIGPTLGLQNIEQGLEACLWGLMASILFMVIYYRKFGLIASSALLANLILIVGVMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEELRNGRSVQQAIHEGYKGAFSSIIDANLTTLITAVILYAVGTGSIKGFAITTAIGVATSMFTAIIGTRAIVNLLYGGKRINKLSI

Flanking regions ( +/- flanking 50bp)

TTCCCGAAGGGACTGCCGTGTTAAACCGTTATCCTTTGTGGAAGTATCTGATGCTGATCGCTGCGATCCTCATCGGTTTGCTTTATGCGCTTCCAAACCTGTATGGAGAGGATCCGGCTGTTCAAATCACTGGCGCGCGGGGAACCGCCGCCAATGAACAGACCCTGGATCAGGTCCGGACCATTTTAGAAAAAGATCAGATCGCGAGTAAGTCGGTCGCACTGGAAAACGGTGTGATACTTGCCCGTTTCTCAAATCCTGATATCCAGTTACGTGCCCGTGAAGAGCTGGTGAAAGGCTTAGGTGAGCAATATGTTGTTGCCCTGAACCTTGCCCCGGCGACACCGAAATGGCTGACCGCCGTGGGTGGCGAGCCGATGAAACTGGGTCTCGACCTGCGTGGTGGTGTGCACTTCCTGATGGAAGTGGATATGGAAACCGCGCTGGGTAAACTGCAGGAGCAGAACCTCGATGGTATCCGCTCGCTGCTGCGTGAAAACAGCATTCCGTTTGCGTCTGTCCGCAAATCAGCGGATTACGGCGTGGAAGTCCGCTTCCGTGATGATGCATCACGTTCCGAAGCCAGCTCGCTGTTATCAAAACGCCTGCGCGATTTAGTCTTCAAAGACGGCACAGATAACACACTGACTGCCGTGATGAGCGACCAGCGCTTAAGTGAAGCGCGCAGCTATGCTGTCATGCAGAACATCACTATCCTGCGTAACCGTGTTAACCAGCTCGGTGTTGCCGAGCCGCTGGTACAGCGCCAGGGTGCGGACCGCATCGTGGTGGAATTACCGGGTATTCAGGACACCGCACGGGCGAAAGAAATCCTCGGGGCAACCGCCACCCTGGAATTCCGTCTGGTCAACGGTGCTGTTGACCCTGCCGCTATCGAAGCAGGCCGTATCCCGGGTGACACTGAAGTGAAATACACCCGTGACGGACGCAAAGTCGCCCTGTACAAGCGTGTGATTCTGACCGGTGACCACATTACTGACTCCACTTCACAGAGTGATGAGTACGGTCAGCCGCAGGTCAGCATCTCGCTGGACAGCGCCGGTGGTAACACCATGTCCGATTTCACCAAGGATAACCTGTATAAGCCGATGGCGACCCTGTTTGTCGAATATAAAGACAGCGGGCGTAAAGATGCCGCAGGCCGCTCAATCCTTGAGAAAAACGAAGAAGTTATCAACATTGCCAATATTCAGTCCCGTTTAGGATCAAACTTCCGTATCACCGGGATTGATAATGCCAATGAAGCACGTCAGTTATCACTGCTGCTGCGTGCCGGTGCCCTGATTGCACCAATCCAGATTGTGGAAGAGCGGACCATCGGGCCGACTCTGGGTCTGCAGAATATCGAGCAGGGCCTGGAAGCGTGTCTGTGGGGGCTGATGGCCTCAATTCTGTTCATGGTGATCTACTACCGTAAATTCGGTCTGATCGCGAGCAGCGCGTTACTGGCGAACCTTATCCTGATTGTCGGGGTGATGTCGCTGTTACCGGGCGCTACGCTGACCATGCCGGGGATTGCGGGGATCGTGCTGACCCTTGCGGTTGCGGTTGATGCGAACGTTCTGATAAACGAACGTATCAAAGAGGAACTGCGCAACGGGCGTTCTGTCCAGCAGGCAATCCATGAAGGGTACAAAGGCGCCTTCTCAAGTATTATCGACGCAAACTTAACCACACTGATTACCGCTGTCATTCTTTACGCGGTCGGTACCGGTTCGATTAAAGGGTTTGCGATTACGACAGCCATTGGTGTGGCAACCTCCATGTTTACAGCGATTATCGGTACACGCGCCATCGTGAACCTGCTGTATGGCGGTAAACGTATTAATAAGCTGTCTATTTAAGGAGCACGTTGTGGCACAGGATTATACTGTTGAACAATTAAACCACGGCC