Homologs in group_2259

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_17395 FBDBKF_17395 84.1 Morganella morganii S1 secD Preprotein translocase subunit SecD
EHELCC_17290 EHELCC_17290 84.1 Morganella morganii S2 secD Preprotein translocase subunit SecD
NLDBIP_17905 NLDBIP_17905 84.1 Morganella morganii S4 secD Preprotein translocase subunit SecD
LHKJJB_17825 LHKJJB_17825 84.1 Morganella morganii S3 secD Preprotein translocase subunit SecD
HKOGLL_17835 HKOGLL_17835 84.1 Morganella morganii S5 secD Preprotein translocase subunit SecD
F4V73_RS16570 F4V73_RS16570 84.2 Morganella psychrotolerans secD protein translocase subunit SecD

Distribution of the homologs in the orthogroup group_2259

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2259

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AG92 0.0 1008 79 0 615 3 secD Protein translocase subunit SecD Shigella flexneri
P0AG90 0.0 1008 79 0 615 1 secD Protein translocase subunit SecD Escherichia coli (strain K12)
P0AG91 0.0 1008 79 0 615 3 secD Protein translocase subunit SecD Escherichia coli O157:H7
Q9ZFF8 0.0 1001 78 0 615 3 secD Protein translocase subunit SecD Salmonella choleraesuis (strain SC-B67)
E9RGS3 0.0 795 64 1 618 1 secD Protein translocase subunit SecD Vibrio alginolyticus
P44591 0.0 772 62 1 616 3 secD Protein translocase subunit SecD Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q9HXI1 0.0 551 48 9 630 3 secD Protein translocase subunit SecD Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
E6W4K8 1.4e-114 355 40 7 527 3 secD Protein translocase subunit SecD Desulfurispirillum indicum (strain ATCC BAA-1389 / DSM 22839 / S5)
A0LCK9 1.64e-112 350 39 6 516 3 secD Protein translocase subunit SecD Magnetococcus marinus (strain ATCC BAA-1437 / JCM 17883 / MC-1)
E4TJ18 7.77e-111 345 39 11 514 3 secD Protein translocase subunit SecD Calditerrivibrio nitroreducens (strain DSM 19672 / NBRC 101217 / Yu37-1)
A0LHM9 3.26e-100 318 36 8 522 3 secD Protein translocase subunit SecD Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB)
Q1RIN3 2.23e-96 307 37 8 498 3 secD Protein translocase subunit SecD Rickettsia bellii (strain RML369-C)
B5YIG9 5.86e-93 299 36 10 530 3 secD Protein translocase subunit SecD Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87)
Q92H77 4.56e-92 296 38 8 501 3 secD Protein translocase subunit SecD Rickettsia conorii (strain ATCC VR-613 / Malish 7)
Q4UKW3 9.2e-92 295 38 8 492 3 secD Protein translocase subunit SecD Rickettsia felis (strain ATCC VR-1525 / URRWXCal2)
Q68WF2 6.7e-91 293 37 7 492 3 secD Protein translocase subunit SecD Rickettsia typhi (strain ATCC VR-144 / Wilmington)
C7JGJ8 1e-88 288 37 11 515 3 secD Protein translocase subunit SecD Acetobacter pasteurianus (strain NBRC 105184 / IFO 3283-01)
O67102 2.84e-88 286 34 7 499 3 secD Protein translocase subunit SecD Aquifex aeolicus (strain VF5)
Q9ZCW8 3.25e-87 283 36 7 504 3 secD Protein translocase subunit SecD Rickettsia prowazekii (strain Madrid E)
Q9ZJ66 2.99e-85 279 36 11 524 3 secD Protein translocase subunit SecD Helicobacter pylori (strain J99 / ATCC 700824)
O26074 4.36e-84 276 35 9 517 3 secD Protein translocase subunit SecD Helicobacter pylori (strain ATCC 700392 / 26695)
B2KBZ1 1.56e-82 270 39 6 405 3 secD Protein translocase subunit SecD Elusimicrobium minutum (strain Pei191)
B1H0M4 2.55e-82 270 38 6 416 3 secD Protein translocase subunit SecD Endomicrobium trichonymphae
Q1IVE9 8.45e-81 267 33 9 533 3 secD Protein translocase subunit SecD Koribacter versatilis (strain Ellin345)
O33517 1.58e-80 267 36 14 531 3 secD Protein translocase subunit SecD Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003)
D2RLC8 1.73e-77 255 37 5 416 3 secD Protein translocase subunit SecD Acidaminococcus fermentans (strain ATCC 25085 / DSM 20731 / CCUG 9996 / CIP 106432 / VR4)
B8E2N3 2.93e-74 246 39 8 380 3 secD Protein translocase subunit SecD Dictyoglomus turgidum (strain DSM 6724 / Z-1310)
C7NC37 2.55e-72 241 39 6 380 3 secD Protein translocase subunit SecD Leptotrichia buccalis (strain ATCC 14201 / DSM 1135 / JCM 12969 / NCTC 10249 / C-1013-b)
D0MIN4 1.29e-65 229 43 6 320 3 secD Protein translocase subunit SecD Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10)
D0MIN4 1.77e-17 89 36 6 177 3 secD Protein translocase subunit SecD Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10)
Q2IKX9 2.12e-65 228 34 15 500 3 secD Protein translocase subunit SecD Anaeromyxobacter dehalogenans (strain 2CP-C)
Q2IKX9 3.84e-16 85 30 2 167 3 secD Protein translocase subunit SecD Anaeromyxobacter dehalogenans (strain 2CP-C)
Q55610 7.92e-65 223 36 10 397 3 secD Protein translocase subunit SecD Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
D1AMK9 2.62e-62 214 34 5 372 3 secD Protein translocase subunit SecD Sebaldella termitidis (strain ATCC 33386 / NCTC 11300)
Q7VCH3 2.5e-61 214 33 11 453 3 secD Protein translocase subunit SecD Prochlorococcus marinus (strain SARG / CCMP1375 / SS120)
O83425 5.92e-61 216 33 8 421 3 secD Protein translocase subunit SecD Treponema pallidum (strain Nichols)
A9BG79 2.93e-59 208 35 10 398 3 secD Protein translocase subunit SecD Petrotoga mobilis (strain DSM 10674 / SJ95)
B0CEA7 3.02e-59 208 34 13 440 3 secD Protein translocase subunit SecD Acaryochloris marina (strain MBIC 11017)
D1CDJ5 1.02e-57 205 34 9 438 3 secD Protein translocase subunit SecD Thermobaculum terrenum (strain ATCC BAA-798 / CCMEE 7001 / YNP1)
P0C117 3.91e-57 208 36 7 359 3 secDF Protein translocase subunit SecDF Brucella abortus biovar 1 (strain 9-941)
P0C117 8.01e-05 49 24 3 158 3 secDF Protein translocase subunit SecDF Brucella abortus biovar 1 (strain 9-941)
Q2YNM0 3.91e-57 208 36 7 359 3 secDF Protein translocase subunit SecDF Brucella abortus (strain 2308)
Q2YNM0 8.01e-05 49 24 3 158 3 secDF Protein translocase subunit SecDF Brucella abortus (strain 2308)
Q5SKE6 2.2e-56 206 39 7 381 1 secDF Protein translocase subunit SecDF Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)
D2BGI6 2.26e-54 194 35 9 397 3 secD Protein translocase subunit SecD Dehalococcoides mccartyi (strain VS)
E8N5I8 5.91e-54 194 33 8 410 3 secD Protein translocase subunit SecD Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 / UNI-1)
O51596 2.6e-53 195 31 10 427 3 secD Protein translocase subunit SecD Borreliella burgdorferi (strain ATCC 35210 / DSM 4680 / CIP 102532 / B31)
O32047 7.57e-43 167 33 9 375 1 secDF Protein translocase subunit SecDF Bacillus subtilis (strain 168)
C1A8P2 2.92e-41 160 27 11 525 3 secD Protein translocase subunit SecD Gemmatimonas aurantiaca (strain DSM 14586 / JCM 11422 / NBRC 100505 / T-27)
C8WQG7 1.14e-38 151 30 11 385 3 secD Protein translocase subunit SecD Alicyclobacillus acidocaldarius subsp. acidocaldarius (strain ATCC 27009 / DSM 446 / BCRC 14685 / JCM 5260 / KCTC 1825 / NBRC 15652 / NCIMB 11725 / NRRL B-14509 / 104-IA)
Q53955 7.85e-21 100 26 5 263 3 secD Protein translocase subunit SecD Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
Q53955 0.000252 47 40 1 74 3 secD Protein translocase subunit SecD Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
P9WGP1 7.53e-17 87 27 5 286 1 secD Protein translocase subunit SecD Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WGP0 7.53e-17 87 27 5 286 3 secD Protein translocase subunit SecD Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P38387 1.76e-16 86 27 7 346 3 secD Protein translocase subunit SecD Mycobacterium leprae (strain TN)
Q8TWM4 3.16e-12 72 27 18 392 3 secD Protein-export membrane protein SecD Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938)
Q8U4B4 6.98e-11 68 27 5 206 3 secD Protein-export membrane protein SecD Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
C5A3H4 1.06e-10 68 29 2 175 3 secD Protein-export membrane protein SecD Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3)
E6W4K9 1.62e-10 66 31 4 163 3 secF Protein translocase subunit SecF Desulfurispirillum indicum (strain ATCC BAA-1389 / DSM 22839 / S5)
Q57575 1.14e-09 64 24 12 374 3 secD Protein-export membrane protein SecD Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
B0CEA6 1.98e-09 63 28 4 165 3 secF Protein translocase subunit SecF Acaryochloris marina (strain MBIC 11017)
E1RHR1 3.15e-09 63 22 18 451 3 secD Protein-export membrane protein SecD Methanolacinia petrolearia (strain DSM 11571 / OCM 486 / SEBR 4847)
A8GQT5 8.58e-08 57 25 4 178 2 secF Protein translocase subunit SecF Rickettsia rickettsii (strain Sheila Smith)
Q18FQ8 1.01e-06 55 23 14 400 3 secD Protein-export membrane protein SecD Haloquadratum walsbyi (strain DSM 16790 / HBSQ001)
A8EXI0 1.5e-06 53 24 3 167 3 secF Protein translocase subunit SecF Rickettsia canadensis (strain McKiel)
A0LCK8 3.8e-06 52 25 4 208 3 secF Protein translocase subunit SecF Magnetococcus marinus (strain ATCC BAA-1437 / JCM 17883 / MC-1)
O26937 4.42e-06 53 25 15 391 3 secD Protein-export membrane protein SecD Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
O06079 8.17e-06 52 27 2 129 3 mmpL11 Probable transport protein MmpL11 Mycobacterium leprae (strain TN)
Q55611 2.42e-05 50 22 3 167 3 secF Protein translocase subunit SecF Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
Q1IVE8 3.25e-05 50 22 3 157 3 secF Protein translocase subunit SecF Koribacter versatilis (strain Ellin345)
A8GJY0 8.64e-05 45 35 0 68 3 mzrA Modulator protein MzrA Serratia proteamaculans (strain 568)
C5A3H3 0.000122 48 26 4 143 3 secF Protein-export membrane protein SecF Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3)
D1CDJ6 0.000151 47 19 3 166 3 secF Protein translocase subunit SecF Thermobaculum terrenum (strain ATCC BAA-798 / CCMEE 7001 / YNP1)
P44590 0.000213 47 24 7 177 3 secF Protein translocase subunit SecF Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
B1XQC0 0.000214 47 23 3 165 3 secF Protein translocase subunit SecF Picosynechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6)
D4GTK5 0.000306 47 22 13 399 1 secD Protein-export membrane protein SecD Haloferax volcanii (strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2)
O26073 0.000313 47 24 2 160 3 secF Protein translocase subunit SecF Helicobacter pylori (strain ATCC 700392 / 26695)
B2KBZ0 0.000313 47 24 10 254 3 secF Protein translocase subunit SecF Elusimicrobium minutum (strain Pei191)
Q9ZJ65 0.00039 46 24 2 160 3 secF Protein translocase subunit SecF Helicobacter pylori (strain J99 / ATCC 700824)
Q58650 0.00041 46 27 5 136 3 secF Protein-export membrane protein SecF Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS00375
Feature type CDS
Gene secD
Product protein translocase subunit SecD
Location 105962 - 107809 (strand: 1)
Length 1848 (nucleotides) / 615 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_2259
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF02355 Protein export membrane protein
PF07549 SecD/SecF GG Motif
PF13721 SecD export protein N-terminal TM region
PF21760 Protein translocase subunit SecDF, P1 domain, N-terminal
PF22599 SecDF, P1 head subdomain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0342 Intracellular trafficking, secretion, and vesicular transport (U) U Preprotein translocase subunit SecD

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03072 preprotein translocase subunit SecD Protein export
Bacterial secretion system		 -

Protein Sequence

MLNRYPLWKYLMLIFAILIGLLYALPNLYGEDPAVQITGARGTAANEQTLDQVRSLLDKEKIEAKSIALENGAILARFSNPDIQLRAREALLPALGDKFVVALNLAPATPKWLEAIGGEPMKLGLDLRGGVHFLMEVDMETALGKLQEQNVDSLRTLLRDEGIPYSSIRKTDNYGVEIRFRNADDRSKASDYLARRNQDLIFRNGDNNSLKAIFTDERLRDARTYAVQQNITILRNRVNQLGVAEPLVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDPSALETGRIPGDSEVKYTRDGRPTILYKRVVLTGDHITDSTSQADEYGQPQVSISLDSAGGSIMSNFTKDNVGKPMATLFVEYKDSGKRDENDRAILVKNEEVINVANIQTRLGNNFRITGISNANEARQLSLLLRAGALIAPIQIVEERTIGPTLGLQNITQGLEACLWGLIASVAFMIIYYRKFGVIASTALLANLVLIVGVMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEELRNGRSVQQAIHEGYKGAFSSIIDANLTTLITAVILYAVGTGSIKGFAITTAIGVATSMFTAIVGTRAIVNLLYGGKRIKKLSI

Flanking regions ( +/- flanking 50bp)

ACAATGAAAGCTATTTAATTTGATTTCCCCAAAGGGAAAAGGGAACTGCCGTGCTAAACCGTTATCCTTTGTGGAAGTATCTGATGTTGATATTCGCTATCCTCATCGGTCTGCTTTACGCACTTCCTAACCTATATGGTGAGGATCCGGCTGTTCAAATCACTGGCGCGCGGGGAACCGCCGCCAATGAGCAAACACTGGATCAAGTTCGATCTTTATTAGATAAAGAAAAAATTGAAGCGAAATCAATCGCCCTTGAAAATGGTGCGATTTTGGCTCGTTTCAGTAACCCTGACATTCAGTTACGTGCCCGTGAAGCGTTGTTACCTGCGTTAGGTGACAAGTTCGTTGTTGCACTTAACCTTGCACCAGCTACGCCAAAATGGTTAGAAGCCATTGGCGGTGAGCCGATGAAATTAGGGTTAGACTTACGTGGTGGTGTTCACTTCTTAATGGAAGTTGATATGGAAACCGCGTTAGGTAAACTTCAAGAACAAAATGTTGATAGTTTACGTACTTTATTACGTGACGAAGGCATTCCATATTCTTCTATCCGCAAAACGGATAATTATGGTGTTGAAATCCGTTTCCGCAACGCTGATGACCGTTCTAAAGCATCAGATTATCTTGCGCGTCGTAACCAAGATCTCATTTTTAGAAATGGGGATAATAACTCGTTAAAAGCTATTTTTACCGACGAGCGTTTACGTGATGCGCGTACTTATGCGGTACAACAAAATATCACCATCCTACGTAACCGTGTCAACCAATTAGGGGTTGCTGAGCCATTAGTTCAACGCCAAGGTGCTGACCGCATTGTTGTTGAATTACCGGGTATTCAAGATACGGCTCGTGCGAAAGAAATCCTAGGTGCAACAGCAACATTAGAATTCCGTTTAGTGAATACTAATGTTGATCCTTCCGCCTTAGAAACAGGACGCATCCCGGGTGACTCAGAAGTGAAATACACTCGAGATGGTAGACCAACCATTCTTTATAAACGTGTTGTATTGACGGGTGACCATATTACCGATTCAACGTCACAAGCCGATGAGTACGGCCAGCCTCAAGTAAGTATTTCACTTGATAGTGCTGGTGGCTCTATTATGTCTAACTTTACCAAAGATAACGTCGGTAAACCGATGGCTACTCTTTTTGTAGAGTATAAAGACAGCGGTAAACGTGATGAAAACGATCGCGCAATTTTGGTAAAAAATGAAGAAGTTATTAACGTGGCTAATATTCAAACCCGTTTAGGTAATAACTTCCGCATTACTGGTATCTCTAATGCGAATGAAGCACGTCAATTATCTCTGTTATTACGTGCTGGAGCATTGATTGCACCTATTCAAATCGTTGAAGAGAGAACCATTGGGCCAACATTAGGTCTTCAGAACATAACTCAAGGTTTAGAAGCTTGTTTATGGGGTCTGATAGCCTCTGTTGCCTTTATGATTATTTATTATCGTAAATTTGGTGTGATCGCGAGTACGGCGCTATTAGCAAACTTGGTGTTAATTGTGGGGGTCATGTCATTATTACCCGGTGCAACGTTAACCATGCCTGGTATTGCGGGTATTGTCTTAACCCTTGCGGTTGCGGTCGATGCTAACGTACTGATCAACGAGCGTATTAAAGAAGAGTTACGTAATGGTCGCTCAGTACAACAAGCTATCCATGAAGGTTATAAAGGTGCCTTCTCCAGTATTATTGATGCGAACTTAACCACGTTAATTACTGCCGTGATCCTTTATGCAGTCGGTACTGGCTCCATTAAAGGGTTTGCTATCACAACTGCTATCGGGGTTGCGACATCCATGTTTACCGCTATTGTGGGTACACGTGCGATTGTAAACCTGCTGTATGGCGGTAAACGCATCAAGAAACTGTCTATTTAAGGAGCACGTTGTGGCACAGGATTATACTGTTGAACAATTAAACCATGGTC