PF21508


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF21508, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF21508
Description MenC, N-terminal domain

Occurence in the database

PF21508 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1882 FBDBKF_14070 6547 7518 -1 menC o-succinylbenzoate synthase Morganella morganii S1
1 group_1882 EHELCC_08210 109467 110438 1 menC o-succinylbenzoate synthase Morganella morganii S2
2 group_1882 NLDBIP_08535 109467 110438 1 menC o-succinylbenzoate synthase Morganella morganii S4
3 group_1882 LHKJJB_05730 146721 147692 -1 menC o-succinylbenzoate synthase Morganella morganii S3
4 group_1882 HKOGLL_05185 94058 95029 1 menC o-succinylbenzoate synthase Morganella morganii S5
5 group_1882 F4V73_RS02865 606922 607893 1 menC o-succinylbenzoate synthase Morganella psychrotolerans
6 group_1882 PMI_RS08550 1864936 1865907 -1 menC o-succinylbenzoate synthase Proteus mirabilis HI4320