PF21500


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF21500, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF21500
Description DNA polymerase III subunit delta', AAA+ ATPase lid domain

Occurence in the database

PF21500 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1959 FBDBKF_14685 35395 36393 -1 holB DNA polymerase III, delta prime subunit Morganella morganii S1
1 group_1959 EHELCC_15490 65471 66469 -1 holB DNA polymerase III, delta prime subunit Morganella morganii S2
2 group_1959 NLDBIP_16020 65471 66469 -1 holB DNA polymerase III, delta prime subunit Morganella morganii S4
3 group_1959 LHKJJB_15820 50217 51215 1 holB DNA polymerase III, delta prime subunit Morganella morganii S3
4 group_1959 HKOGLL_14940 49429 50427 1 holB DNA polymerase III, delta prime subunit Morganella morganii S5
5 group_1959 F4V73_RS07480 1564027 1565028 -1 holB DNA polymerase III subunit delta' Morganella psychrotolerans
6 group_1959 PMI_RS04255 956273 957259 1 holB DNA polymerase III subunit delta' Proteus mirabilis HI4320