PF21372


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF21372, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF21372
Description Topoisomerase I, zinc finger

Occurence in the database

PF21372 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_940 FBDBKF_05115 29121 31709 -1 topA type I DNA topoisomerase Morganella morganii S1
1 group_940 EHELCC_12475 149785 152373 1 topA type I DNA topoisomerase Morganella morganii S2
2 group_940 NLDBIP_12815 149740 152328 1 topA type I DNA topoisomerase Morganella morganii S4
3 group_940 LHKJJB_12675 149785 152373 1 topA type I DNA topoisomerase Morganella morganii S3
4 group_940 HKOGLL_11290 149785 152373 1 topA type I DNA topoisomerase Morganella morganii S5
5 group_940 F4V73_RS05570 1184169 1186769 -1 topA type I DNA topoisomerase Morganella psychrotolerans
6 group_940 PMI_RS06435 1411151 1413748 -1 topA type I DNA topoisomerase Proteus mirabilis HI4320