PF21214


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF21214, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF21214
Description Selenocysteine-specific elongation factor, winged helix domain

Occurence in the database

PF21214 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2149 FBDBKF_16145 19775 21637 1 selB selenocysteine-specific translation elongation factor Morganella morganii S1
1 group_2149 EHELCC_16180 19775 21637 1 selB selenocysteine-specific translation elongation factor Morganella morganii S2
2 group_2149 NLDBIP_17160 40533 42395 -1 selB selenocysteine-specific translation elongation factor Morganella morganii S4
3 group_2149 LHKJJB_17080 43635 45497 -1 selB selenocysteine-specific translation elongation factor Morganella morganii S3
4 group_2149 HKOGLL_16760 19775 21637 1 selB selenocysteine-specific translation elongation factor Morganella morganii S5
5 group_2149 F4V73_RS17470 124550 126412 -1 selB selenocysteine-specific translation elongation factor Morganella psychrotolerans
6 group_2149 PMI_RS15370 3414035 3415897 -1 selB selenocysteine-specific translation elongation factor Proteus mirabilis HI4320