PF21070


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF21070, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 8 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF21070
Description Type VI secretion protein IcmF helical domain

Occurence in the database

PF21070 is associated with 8 different proteins (see tab "Protein list" and "Profile")
The 8 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_113 FBDBKF_01355 263941 267489 1 tssM type VI secretion system membrane subunit TssM Morganella morganii S1
1 group_113 EHELCC_00190 41379 44927 -1 tssM type VI secretion system membrane subunit TssM Morganella morganii S2
2 group_113 NLDBIP_03270 635209 638757 1 tssM type VI secretion system membrane subunit TssM Morganella morganii S4
3 group_113 LHKJJB_04785 242450 245998 1 tssM type VI secretion system membrane subunit TssM Morganella morganii S3
4 group_113 HKOGLL_02260 41584 45132 -1 tssM type VI secretion system membrane subunit TssM Morganella morganii S5
5 group_113 F4V73_RS02315 488583 492074 -1 tssM type VI secretion system membrane subunit TssM Morganella psychrotolerans
6 group_113 F4V73_RS16760 174966 178172 -1 ImcF-related family protein Morganella psychrotolerans
7 group_113 PMI_RS03620 811475 815023 -1 tssM type VI secretion system membrane subunit TssM Proteus mirabilis HI4320