PF20560


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF20560, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF20560
Description Motility protein A N-terminal

Occurence in the database

PF20560 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_486 FBDBKF_00805 148570 149457 -1 motA flagellar motor stator protein MotA Morganella morganii S1
1 group_486 EHELCC_00740 159411 160298 1 motA flagellar motor stator protein MotA Morganella morganii S2
2 group_486 NLDBIP_02720 519838 520725 -1 motA flagellar motor stator protein MotA Morganella morganii S4
3 group_486 LHKJJB_04235 127079 127966 -1 motA flagellar motor stator protein MotA Morganella morganii S3
4 group_486 HKOGLL_02810 159616 160503 1 motA flagellar motor stator protein MotA Morganella morganii S5
5 group_486 F4V73_RS06805 1413498 1414385 -1 motA flagellar motor stator protein MotA Morganella psychrotolerans
6 group_486 PMI_RS08155 1783190 1784083 -1 motA flagellar motor stator protein MotA Proteus mirabilis HI4320