PF20441


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF20441, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF20441
Description Terminase large subunit, endonuclease domain

Occurence in the database

PF20441 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2340 FBDBKF_18640 14700 16430 -1 Terminase Morganella morganii S1
1 group_2340 FBDBKF_19415 13798 15528 -1 ymfN Phage terminase-like protein, large subunit, contains N-terminal HTH domain Morganella morganii S1
2 group_2340 EHELCC_15215 14700 16430 -1 Terminase Morganella morganii S2
3 group_2340 NLDBIP_15745 14700 16430 -1 Terminase Morganella morganii S4
4 group_2340 LHKJJB_16095 100256 101986 1 Terminase Morganella morganii S3
5 group_2340 HKOGLL_15215 99468 101198 1 Terminase Morganella morganii S5
6 group_2340 PMI_RS04530 1005425 1007158 1 terminase large subunit Proteus mirabilis HI4320