Homologs in group_2340

Help

6 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_18640 FBDBKF_18640 30.7 Morganella morganii S1 - Terminase
FBDBKF_19415 FBDBKF_19415 32.5 Morganella morganii S1 ymfN Phage terminase-like protein, large subunit, contains N-terminal HTH domain
EHELCC_15215 EHELCC_15215 30.7 Morganella morganii S2 - Terminase
NLDBIP_15745 NLDBIP_15745 30.7 Morganella morganii S4 - Terminase
LHKJJB_16095 LHKJJB_16095 30.7 Morganella morganii S3 - Terminase
HKOGLL_15215 HKOGLL_15215 30.7 Morganella morganii S5 - Terminase

Distribution of the homologs in the orthogroup group_2340

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_2340

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P59217 1.25e-69 238 30 20 573 3 2 Putative terminase large subunit Shigella phage SfV
P75978 2.95e-34 138 27 13 368 3 ymfN Protein YmfN Escherichia coli (strain K12)
O21870 3.93e-08 59 21 17 494 3 None Terminase large subunit Lactococcus phage SK1
D3WAC1 1.02e-07 58 21 17 494 3 None Terminase large subunit Lactococcus phage p2

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS04530
Feature type CDS
Gene -
Product terminase large subunit
Location 1005425 - 1007158 (strand: 1)
Length 1734 (nucleotides) / 577 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_2340
Orthogroup size 7
N. genomes 6

Actions

Genomic region

Domains

PF03354 Terminase large subunit, ATPase domain
PF20441 Terminase large subunit, endonuclease domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG4626 Mobilome: prophages, transposons (X) X Phage terminase-like protein, large subunit, contains N-terminal HTH domain

Protein Sequence

MVEKKRKIRSTNISVDPATQYAQDVHQGKILAGPDIRHACARHLKDLNEAEQRGLVWDVEAVKRVIDFFAKVLKLNGGEHEGKPFILLPWQCFVIGSIFGWKMTDGTRRFRIVYVESGKGSGKSPMAGGVGLYCLVADSEPRAEVYAAATKKDQAMVLFRDAVAMVDQSPALSQRITKSGGTGKEWNLAYLKTSSFFRPISSDDGQSGPRPHCALIDEIHEHKNNTAVEMMRAGTKGRRQALIFMITNSGHDKTSVCYDYHEYGRKVAEGTIEDDSFFSYICSLDEGDDPFKDESCWGKANPSLGYTFSDRYLREQVTQARGMPAKESIVRRLNFCQWVDADNPWINSETWMQCENTFTFDDLQGEECYGGLDLSGTKDLTALALYFPSLKRLYVEFWTPKDTLLDRAKTDRVPYDLWVRQGFMHTTPGNAVRYEFVAERIAEMAMHVSMRAIAFDPYRIKYLEPKLDDAGVTVPLTPHGQGYYKAKDSGLWMPHSIELFEQLIDDKKIEIHTNPCLRWNAASAVLEADQKDNRVFAKKKSTGRIDGVVASAMAIGAAEGEVDNGNLDDFFSNPLSM

Flanking regions ( +/- flanking 50bp)

TTTAGTCGAGTTTGGTTTAACCCCCGCCGCTCGTTCGAAGGTGAAGATGGATGGTGGAGAAGAAGAGGAAGATCCGCTCAACCAATATTTCGGTTGATCCCGCAACACAATACGCGCAAGACGTGCATCAAGGCAAAATCTTAGCGGGGCCTGATATTCGTCATGCATGTGCACGTCATCTCAAAGATTTAAACGAAGCCGAGCAACGAGGATTAGTCTGGGATGTCGAGGCTGTCAAAAGGGTGATCGATTTTTTCGCGAAAGTCTTAAAGCTCAATGGCGGGGAACATGAAGGCAAACCGTTTATTTTATTGCCTTGGCAATGCTTTGTGATTGGCTCCATTTTTGGCTGGAAAATGACTGATGGTACACGGCGATTTCGCATTGTGTACGTTGAATCAGGTAAAGGTTCAGGAAAATCACCGATGGCGGGTGGCGTTGGGTTGTATTGTTTAGTCGCCGACAGTGAACCGCGTGCTGAAGTGTATGCGGCAGCCACGAAAAAAGACCAAGCCATGGTTTTGTTTCGTGATGCGGTGGCAATGGTTGATCAATCTCCCGCATTAAGTCAGCGGATCACCAAATCAGGCGGAACAGGCAAAGAGTGGAACTTGGCTTATTTGAAAACGAGTTCATTCTTTCGTCCGATTAGTTCGGATGATGGGCAATCAGGGCCTCGTCCCCATTGTGCGTTGATTGATGAAATTCATGAGCACAAAAATAATACCGCCGTCGAGATGATGCGAGCGGGTACAAAAGGTCGGCGGCAAGCCTTGATATTTATGATCACCAACAGTGGCCATGATAAAACCAGTGTGTGTTATGACTATCATGAATACGGACGAAAAGTCGCCGAAGGAACTATCGAAGACGACAGTTTCTTTTCCTATATTTGCTCACTGGATGAAGGCGATGATCCCTTTAAGGATGAGTCTTGCTGGGGGAAAGCCAATCCATCACTGGGCTACACCTTTTCTGATCGCTATTTGCGCGAGCAAGTGACACAAGCTCGAGGTATGCCCGCGAAAGAAAGCATTGTGCGTCGGCTTAATTTTTGTCAGTGGGTGGATGCCGATAATCCGTGGATTAACAGTGAAACATGGATGCAGTGTGAAAACACGTTCACATTCGATGACCTTCAAGGTGAAGAGTGTTATGGCGGACTGGACTTATCGGGAACCAAAGATTTAACCGCATTAGCCTTGTATTTTCCTAGTCTCAAACGTCTTTATGTCGAATTTTGGACACCCAAAGACACTTTATTGGATAGAGCGAAAACCGACCGAGTGCCTTACGACTTATGGGTAAGGCAAGGTTTTATGCATACCACGCCAGGGAATGCGGTGAGATATGAATTTGTGGCAGAACGCATTGCTGAAATGGCGATGCACGTCAGCATGAGAGCCATTGCCTTTGACCCTTATCGCATTAAATACCTTGAACCCAAACTCGATGACGCGGGTGTGACGGTTCCTTTAACTCCGCATGGACAAGGATATTACAAAGCCAAAGATTCAGGGCTGTGGATGCCACACTCTATCGAACTGTTTGAACAGCTCATTGATGACAAGAAGATTGAGATCCACACCAATCCTTGTTTGAGATGGAATGCTGCATCCGCTGTGCTTGAGGCTGACCAAAAAGATAACCGCGTCTTTGCCAAGAAAAAAAGCACCGGTCGAATCGATGGTGTGGTGGCCTCTGCAATGGCGATTGGTGCTGCGGAAGGTGAGGTTGATAATGGCAACCTTGATGATTTTTTCTCTAACCCATTGAGTATGTGATGACAGATAAACAATATTCAATCGATTTGCGCACTAATCATGGTTGGTTT