Homologs in group_2340

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_19415 FBDBKF_19415 39.2 Morganella morganii S1 ymfN Phage terminase-like protein, large subunit, contains N-terminal HTH domain
EHELCC_15215 EHELCC_15215 100.0 Morganella morganii S2 - Terminase
NLDBIP_15745 NLDBIP_15745 100.0 Morganella morganii S4 - Terminase
LHKJJB_16095 LHKJJB_16095 100.0 Morganella morganii S3 - Terminase
HKOGLL_15215 HKOGLL_15215 100.0 Morganella morganii S5 - Terminase
PMI_RS04530 PMI_RS04530 30.7 Proteus mirabilis HI4320 - terminase large subunit

Distribution of the homologs in the orthogroup group_2340

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2340

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P59217 0 994 81 1 564 3 2 Putative terminase large subunit Shigella phage SfV
P75978 0 610 76 1 367 3 ymfN Protein YmfN Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Morganella morganii S1
Locus tag FBDBKF_18640
Feature type CDS
Gene -
Product Terminase
Location 14700 - 16430 (strand: -1)
Length 1731 (nucleotides) / 576 (amino acids)

Contig

Accession contig_35
Length 30077 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2340
Orthogroup size 7
N. genomes 6

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Genomic region

Domains

PF03354 Terminase large subunit, ATPase domain
PF20441 Terminase large subunit, endonuclease domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG4626 Mobilome: prophages, transposons (X) X Phage terminase-like protein, large subunit, contains N-terminal HTH domain

Protein Sequence

MSRKSYPNVNAASQYARDVVRGKIVACQYVKDACQRHLDDLSEEKSRKFRYRFDKDLAEQAAKFIQLLPHTKGEWAFKRMPITLEPWQLFIVCSAFGWVHKGSRLRRFREVYTEIPRKNGKSAISAGVALYCFTCDNEFGAEIYSGATTEKQAWEVFRPAKLMCKRTPLLTEAFGIEVNAKNMNRPEDGARFEPLIGSPGDGQSPHCAIVDEYHEHDTDALYTTMITGMGARRQPLMWAITTAGYNIEGPCYDKRREVIEMLNGTVPNPELFGIIYTVDDGDDWTDPATLRKANPNMGVSVYSDFLISQQNRAKNNARLAGIFKTKHLNIWVSARAAYFNMVSWRECEDKTLTLEMFEGQSCVQALDLARKLDMNSRVRLFHRVIDGKRHYYCISPDFYVPYDAVFSVDVENRRTAERFMKWVETKHLKLTAGAEIDYRVILEDAKAGNLINPVDETAIDPHGATNISHELADEGMNPITIVQNYTNMSDPMKELEAAVAAGRFHHDGNPIMTWCIGNVVGRYLPGNDDVVRPTKEQNENKIDGATALIMAIGRAMLNGPGDFLSSLDPDEEILFL

Flanking regions ( +/- flanking 50bp)

TTGGCGGGACAGAAAAAACAGGATAATCCGTTTATGAGGTTAATCACATCATGAGTCGCAAATCTTACCCGAACGTAAACGCGGCCAGTCAGTATGCCCGCGACGTGGTTCGCGGCAAGATTGTGGCCTGTCAGTACGTGAAAGATGCCTGCCAGCGTCATCTGGATGATCTGAGTGAAGAAAAAAGCCGTAAATTCCGGTACCGGTTTGATAAAGACCTGGCGGAACAGGCCGCAAAATTTATCCAGCTGCTGCCGCACACCAAAGGTGAATGGGCATTTAAGCGCATGCCGATAACACTGGAGCCGTGGCAGCTATTTATTGTCTGCAGTGCATTTGGCTGGGTTCACAAGGGCAGCAGGCTGCGGCGGTTCCGTGAAGTTTATACGGAGATCCCCCGTAAGAATGGTAAATCAGCTATTTCAGCCGGTGTTGCTCTGTATTGTTTTACCTGTGATAACGAGTTTGGTGCTGAAATCTACTCCGGTGCAACCACGGAAAAGCAGGCATGGGAAGTGTTCCGTCCTGCAAAACTGATGTGTAAGCGTACCCCGCTGCTGACGGAGGCATTCGGTATCGAGGTCAATGCGAAAAACATGAACCGGCCGGAAGACGGGGCGCGGTTTGAGCCGCTTATCGGATCCCCCGGTGATGGTCAGTCCCCGCACTGCGCTATCGTTGATGAATACCATGAGCACGACACGGATGCCCTGTACACGACCATGATTACCGGTATGGGGGCCAGGCGGCAGCCGCTGATGTGGGCTATCACCACCGCCGGATATAACATTGAAGGCCCGTGTTACGACAAGCGGCGTGAAGTGATTGAAATGCTCAACGGCACGGTGCCGAATCCTGAGCTTTTCGGCATTATTTATACCGTTGATGATGGTGATGACTGGACAGATCCGGCAACATTGCGCAAAGCAAATCCGAATATGGGGGTTTCTGTCTACAGTGACTTCCTGATCAGCCAGCAGAACAGAGCCAAAAACAATGCCCGTCTGGCGGGTATATTTAAAACAAAGCACCTGAATATCTGGGTTTCCGCCCGGGCGGCCTATTTCAACATGGTGTCCTGGCGGGAATGTGAGGATAAGACACTCACCCTGGAAATGTTCGAGGGGCAATCCTGTGTTCAGGCTCTGGATTTAGCCAGAAAACTCGACATGAATTCACGGGTAAGGCTTTTTCACCGGGTTATTGACGGCAAACGCCATTACTACTGTATTTCACCTGATTTTTATGTTCCGTATGACGCCGTATTCAGCGTTGATGTTGAAAACAGACGTACAGCAGAGCGTTTTATGAAATGGGTGGAAACGAAGCATCTTAAACTTACAGCAGGAGCGGAGATTGATTACCGCGTCATTCTGGAAGATGCGAAGGCCGGAAACCTGATAAATCCGGTTGATGAGACAGCAATCGACCCTCACGGCGCAACAAACATCTCCCATGAGCTGGCTGACGAGGGGATGAATCCGATCACTATAGTACAAAACTACACCAACATGTCCGACCCGATGAAGGAGCTGGAAGCTGCTGTAGCGGCCGGACGGTTCCACCATGACGGCAATCCGATCATGACATGGTGTATCGGTAACGTGGTCGGCAGATATCTGCCGGGCAATGATGATGTTGTCCGCCCAACCAAAGAGCAGAACGAAAACAAAATTGACGGTGCAACAGCGCTGATTATGGCCATAGGCAGAGCGATGCTGAACGGTCCCGGTGACTTCCTTTCCTCTCTGGATCCTGACGAAGAAATTCTATTCCTATGAAAAATATACTTCTTGATCTCACTGCCCTGACAGGTTTCGGTGCGGTGCTG