PF17746


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF17746, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF17746
Description SfsA N-terminal OB domain

Occurence in the database

PF17746 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1310 FBDBKF_08025 137211 137921 -1 sfsA DNA/RNA nuclease SfsA Morganella morganii S1
1 group_1310 EHELCC_13855 111405 112115 -1 sfsA DNA/RNA nuclease SfsA Morganella morganii S2
2 group_1310 NLDBIP_14300 132280 132990 -1 sfsA DNA/RNA nuclease SfsA Morganella morganii S4
3 group_1310 LHKJJB_08550 26759 27469 1 sfsA DNA/RNA nuclease SfsA Morganella morganii S3
4 group_1310 HKOGLL_08100 26759 27469 1 sfsA DNA/RNA nuclease SfsA Morganella morganii S5
5 group_1310 F4V73_RS12965 205805 206515 1 sfsA DNA/RNA nuclease SfsA Morganella psychrotolerans
6 group_1310 PMI_RS00970 236741 237451 -1 sfsA DNA/RNA nuclease SfsA Proteus mirabilis HI4320