PF16363


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF16363, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 9 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF16363
Description GDP-mannose 4,6 dehydratase

Occurence in the database

PF16363 is associated with 9 different proteins (see tab "Protein list" and "Profile")
The 9 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1332 FBDBKF_08240 26394 27467 1 rffG dTDP-glucose 4,6-dehydratase Morganella morganii S1
1 group_1332 EHELCC_13285 136258 137331 -1 rffG dTDP-glucose 4,6-dehydratase Morganella morganii S2
2 group_1332 NLDBIP_13625 136258 137331 -1 rffG dTDP-glucose 4,6-dehydratase Morganella morganii S4
3 group_1332 LHKJJB_12930 25112 26185 1 rffG dTDP-glucose 4,6-dehydratase Morganella morganii S3
4 group_1332 HKOGLL_12100 136258 137331 -1 rffG dTDP-glucose 4,6-dehydratase Morganella morganii S5
5 group_1658 F4V73_RS08190 1704103 1705119 -1 galE UDP-glucose 4-epimerase GalE Morganella psychrotolerans
6 group_1332 F4V73_RS18790 27549 28628 1 rffG dTDP-glucose 4,6-dehydratase Morganella psychrotolerans
7 group_1658 PMI_RS09615 2100501 2101517 -1 galE UDP-glucose 4-epimerase GalE Proteus mirabilis HI4320
8 group_1332 PMI_RS16500 3639779 3640852 1 rffG dTDP-glucose 4,6-dehydratase Proteus mirabilis HI4320