PF16359


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF16359, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF16359
Description RcsD-ABL domain

Occurence in the database

PF16359 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_432 FBDBKF_00375 47826 50540 1 rcsD phosphotransferase RcsD Morganella morganii S1
1 group_432 EHELCC_01170 258328 261042 -1 rcsD phosphotransferase RcsD Morganella morganii S2
2 group_432 NLDBIP_02290 419094 421808 1 rcsD phosphotransferase RcsD Morganella morganii S4
3 group_432 LHKJJB_03805 26335 29049 1 rcsD phosphotransferase RcsD Morganella morganii S3
4 group_432 HKOGLL_03240 258533 261247 -1 rcsD phosphotransferase RcsD Morganella morganii S5
5 group_432 F4V73_RS06355 1320008 1322722 1 rcsD phosphotransferase RcsD Morganella psychrotolerans
6 group_432 PMI_RS08485 1845004 1847697 1 rcsD phosphotransferase RcsD Proteus mirabilis HI4320