PF16320


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF16320, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF16320
Description Ribosomal protein L7/L12 dimerisation domain

Occurence in the database

PF16320 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2288 FBDBKF_17570 4124 4489 1 rplL 50S ribosomal protein L7/L12 Morganella morganii S1
1 group_2288 EHELCC_18055 3500 3865 1 rplL 50S ribosomal protein L7/L12 Morganella morganii S2
2 group_2288 NLDBIP_18095 34872 35237 -1 rplL 50S ribosomal protein L7/L12 Morganella morganii S4
3 group_2288 LHKJJB_18290 34872 35237 -1 rplL 50S ribosomal protein L7/L12 Morganella morganii S3
4 group_2288 HKOGLL_17910 3500 3865 1 rplL 50S ribosomal protein L7/L12 Morganella morganii S5
5 group_2288 F4V73_RS14955 222682 223047 1 rplL 50S ribosomal protein L7/L12 Morganella psychrotolerans
6 group_2288 PMI_RS13760 3062195 3062560 -1 rplL 50S ribosomal protein L7/L12 Proteus mirabilis HI4320