PF14520


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF14520, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 28 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF14520
Description Helix-hairpin-helix domain

Occurence in the database

PF14520 is associated with 28 different proteins (see tab "Protein list" and "Profile")
The 28 proteins are classified into 4 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_635 FBDBKF_02060 100420 101034 1 ruvA Holliday junction branch migration protein RuvA Morganella morganii S1
1 group_1403 FBDBKF_08665 112896 114407 1 nusA Transcription antitermination factor NusA, contains S1 and KH domains Morganella morganii S1
2 group_340 FBDBKF_11620 119565 121586 1 ligA NAD-dependent DNA ligase LigA Morganella morganii S1
3 group_2095 FBDBKF_15765 4487 6334 1 uvrC excinuclease ABC subunit UvrC Morganella morganii S1
4 group_635 EHELCC_02530 488240 488854 1 ruvA Holliday junction branch migration protein RuvA Morganella morganii S2
5 group_1403 EHELCC_12860 49318 50829 -1 nusA Transcription antitermination factor NusA, contains S1 and KH domains Morganella morganii S2
6 group_340 EHELCC_17540 17908 19929 1 ligA NAD-dependent DNA ligase LigA Morganella morganii S2
7 group_2095 EHELCC_17680 38416 40263 1 uvrC excinuclease ABC subunit UvrC Morganella morganii S2
8 group_635 NLDBIP_00930 191282 191896 -1 ruvA Holliday junction branch migration protein RuvA Morganella morganii S4
9 group_1403 NLDBIP_13200 49318 50829 -1 nusA Transcription antitermination factor NusA, contains S1 and KH domains Morganella morganii S4
10 group_340 NLDBIP_18750 18655 20676 1 ligA NAD-dependent DNA ligase LigA Morganella morganii S4
11 group_2095 NLDBIP_19350 14361 16208 1 uvrC excinuclease ABC subunit UvrC Morganella morganii S4
12 group_635 LHKJJB_01105 200789 201403 1 ruvA Holliday junction branch migration protein RuvA Morganella morganii S3
13 group_1403 LHKJJB_13355 111614 113125 1 nusA Transcription antitermination factor NusA, contains S1 and KH domains Morganella morganii S3
14 group_340 LHKJJB_17980 17908 19929 1 ligA NAD-dependent DNA ligase LigA Morganella morganii S3
15 group_2095 LHKJJB_18120 38416 40263 1 uvrC excinuclease ABC subunit UvrC Morganella morganii S3
16 group_635 HKOGLL_01145 206300 206914 1 ruvA Holliday junction branch migration protein RuvA Morganella morganii S5
17 group_1403 HKOGLL_11675 49318 50829 -1 nusA Transcription antitermination factor NusA, contains S1 and KH domains Morganella morganii S5
18 group_340 HKOGLL_18670 4302 6323 -1 ligA NAD-dependent DNA ligase LigA Morganella morganii S5
19 group_2095 HKOGLL_18960 1791 3638 -1 uvrC excinuclease ABC subunit UvrC Morganella morganii S5
20 group_635 F4V73_RS04425 936257 936871 1 ruvA Holliday junction branch migration protein RuvA Morganella psychrotolerans
21 group_2095 F4V73_RS07925 1650689 1652536 -1 uvrC excinuclease ABC subunit UvrC Morganella psychrotolerans
22 group_340 F4V73_RS08060 1672225 1674255 -1 ligA NAD-dependent DNA ligase LigA Morganella psychrotolerans
23 group_1403 F4V73_RS09890 80059 81570 1 nusA transcription termination factor NusA Morganella psychrotolerans
24 group_635 PMI_RS05410 1183518 1184141 1 ruvA Holliday junction branch migration protein RuvA Proteus mirabilis HI4320
25 group_2095 PMI_RS07400 1614670 1616502 -1 uvrC excinuclease ABC subunit UvrC Proteus mirabilis HI4320
26 group_340 PMI_RS08995 1960076 1962103 -1 ligA NAD-dependent DNA ligase LigA Proteus mirabilis HI4320
27 group_1403 PMI_RS17020 3743179 3744687 1 nusA transcription termination factor NusA Proteus mirabilis HI4320