PF13977


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF13977, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF13977
Description BetI-type transcriptional repressor, C-terminal

Occurence in the database

PF13977 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2585 FBDBKF_02885 270943 271533 -1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S1
1 group_2585 EHELCC_03355 658763 659353 -1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S2
2 group_2585 NLDBIP_00105 20783 21373 1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S4
3 group_2585 LHKJJB_01930 371312 371902 -1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S3
4 group_2585 HKOGLL_01970 376823 377413 -1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S5
5 group_2585 F4V73_RS05330 1130961 1131563 -1 TetR/AcrR family transcriptional regulator Morganella psychrotolerans
6 group_3669 PMI_RS07070 1542890 1543492 -1 betI transcriptional regulator BetI Proteus mirabilis HI4320