PF13973


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF13973, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 10 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF13973
Description Domain of unknown function (DUF4222)

Occurence in the database

PF13973 is associated with 10 different proteins (see tab "Protein list" and "Profile")
The 10 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_157 FBDBKF_12395 5602 5790 -1 DUF4222 domain-containing protein Morganella morganii S1
1 group_157 FBDBKF_18715 24775 24963 -1 DUF4222 domain-containing protein Morganella morganii S1
2 group_157 EHELCC_15290 24775 24963 -1 DUF4222 domain-containing protein Morganella morganii S2
3 group_157 EHELCC_19160 6157 6345 -1 DUF4222 domain-containing protein Morganella morganii S2
4 group_157 NLDBIP_15820 24775 24963 -1 DUF4222 domain-containing protein Morganella morganii S4
5 group_157 NLDBIP_19130 12096 12284 -1 DUF4222 domain-containing protein Morganella morganii S4
6 group_157 LHKJJB_16020 91723 91911 1 DUF4222 domain-containing protein Morganella morganii S3
7 group_157 LHKJJB_19020 12096 12284 -1 DUF4222 domain-containing protein Morganella morganii S3
8 group_157 HKOGLL_15140 90935 91123 1 DUF4222 domain-containing protein Morganella morganii S5
9 group_157 PMI_RS04455 992227 992406 1 DUF4222 domain-containing protein Proteus mirabilis HI4320