PF13730


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF13730, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 11 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF13730
Description Helix-turn-helix domain

Occurence in the database

PF13730 is associated with 11 different proteins (see tab "Protein list" and "Profile")
The 11 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_125 FBDBKF_12390 4721 5605 -1 Primosomal protein I Morganella morganii S1
1 group_125 FBDBKF_12880 80806 81588 -1 Phage terminase, large subunit Morganella morganii S1
2 group_125 FBDBKF_18710 23894 24778 -1 Primosomal protein I Morganella morganii S1
3 group_125 EHELCC_15285 23894 24778 -1 Primosomal protein I Morganella morganii S2
4 group_125 EHELCC_19155 5276 6160 -1 Primosomal protein I Morganella morganii S2
5 group_125 NLDBIP_15815 23894 24778 -1 Primosomal protein I Morganella morganii S4
6 group_125 NLDBIP_19125 11215 12099 -1 Primosomal protein I Morganella morganii S4
7 group_125 LHKJJB_16025 91908 92792 1 Primosomal protein I Morganella morganii S3
8 group_125 LHKJJB_19015 11215 12099 -1 Primosomal protein I Morganella morganii S3
9 group_125 HKOGLL_15145 91120 92004 1 Primosomal protein I Morganella morganii S5
10 group_125 PMI_RS02395 538355 539122 1 helix-turn-helix domain-containing protein Proteus mirabilis HI4320