PF13693


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF13693, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 14 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF13693
Description Winged helix-turn-helix DNA-binding

Occurence in the database

PF13693 is associated with 14 different proteins (see tab "Protein list" and "Profile")
The 14 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_190 FBDBKF_08580 99051 99317 -1 sfsB putative transcriptional regulator, lambda repressor-like DNA-binding domain Morganella morganii S1
1 group_3431 FBDBKF_14440 86672 86887 -1 Transcriptional regulator Morganella morganii S1
2 group_3431 EHELCC_07840 30098 30313 1 Transcriptional regulator Morganella morganii S2
3 group_190 EHELCC_12945 64408 64674 1 sfsB putative transcriptional regulator, lambda repressor-like DNA-binding domain Morganella morganii S2
4 group_3431 NLDBIP_08165 30098 30313 1 Transcriptional regulator Morganella morganii S4
5 group_190 NLDBIP_13285 64408 64674 1 sfsB putative transcriptional regulator, lambda repressor-like DNA-binding domain Morganella morganii S4
6 group_3431 LHKJJB_06100 226846 227061 -1 Transcriptional regulator Morganella morganii S3
7 group_190 LHKJJB_13270 97769 98035 -1 sfsB putative transcriptional regulator, lambda repressor-like DNA-binding domain Morganella morganii S3
8 group_3431 HKOGLL_04815 14689 14904 1 Transcriptional regulator Morganella morganii S5
9 group_190 HKOGLL_11760 64408 64674 1 sfsB putative transcriptional regulator, lambda repressor-like DNA-binding domain Morganella morganii S5
10 group_190 F4V73_RS09805 65633 65899 -1 helix-turn-helix transcriptional regulator Morganella psychrotolerans
11 group_190 F4V73_RS16960 13989 14216 1 helix-turn-helix transcriptional regulator Morganella psychrotolerans
12 group_190 PMI_RS04690 1034308 1034580 -1 helix-turn-helix transcriptional regulator Proteus mirabilis HI4320
13 group_190 PMI_RS16930 3729354 3729620 -1 helix-turn-helix transcriptional regulator Proteus mirabilis HI4320