PF13500


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF13500, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 21 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF13500
Description AAA domain

Occurence in the database

PF13500 is associated with 21 different proteins (see tab "Protein list" and "Profile")
The 21 proteins are classified into 3 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_696 FBDBKF_02965 286413 287102 -1 bioD dethiobiotin synthase Morganella morganii S1
1 group_1488 FBDBKF_09605 19924 20607 -1 bioD dethiobiotin synthase Morganella morganii S1
2 group_1906 FBDBKF_14210 39360 41507 1 pta phosphate acetyltransferase Morganella morganii S1
3 group_696 EHELCC_03435 674233 674922 -1 bioD dethiobiotin synthase Morganella morganii S2
4 group_1488 EHELCC_04405 211889 212572 -1 bioD dethiobiotin synthase Morganella morganii S2
5 group_1906 EHELCC_08070 75478 77625 -1 pta phosphate acetyltransferase Morganella morganii S2
6 group_696 NLDBIP_00025 5214 5903 1 bioD dethiobiotin synthase Morganella morganii S4
7 group_1488 NLDBIP_04405 211685 212368 -1 bioD dethiobiotin synthase Morganella morganii S4
8 group_1906 NLDBIP_08395 75478 77625 -1 pta phosphate acetyltransferase Morganella morganii S4
9 group_696 LHKJJB_02010 386782 387471 -1 bioD dethiobiotin synthase Morganella morganii S3
10 group_1906 LHKJJB_05870 179534 181681 1 pta phosphate acetyltransferase Morganella morganii S3
11 group_1488 LHKJJB_14225 123010 123693 1 bioD dethiobiotin synthase Morganella morganii S3
12 group_696 HKOGLL_02050 392293 392982 -1 bioD dethiobiotin synthase Morganella morganii S5
13 group_1906 HKOGLL_05045 60069 62216 -1 pta phosphate acetyltransferase Morganella morganii S5
14 group_1488 HKOGLL_12310 20705 21388 -1 bioD dethiobiotin synthase Morganella morganii S5
15 group_1488 F4V73_RS00735 152995 153675 1 bioD dethiobiotin synthase Morganella psychrotolerans
16 group_1906 F4V73_RS02720 572349 574493 -1 pta phosphate acetyltransferase Morganella psychrotolerans
17 group_696 F4V73_RS05405 1146536 1147225 -1 bioD dethiobiotin synthase Morganella psychrotolerans
18 group_1488 PMI_RS02985 658009 658695 1 bioD dethiobiotin synthase Proteus mirabilis HI4320
19 group_696 PMI_RS06230 1363931 1364602 -1 bioD dethiobiotin synthase Proteus mirabilis HI4320
20 group_1906 PMI_RS08690 1898593 1900737 1 pta phosphate acetyltransferase Proteus mirabilis HI4320