PF13473


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF13473, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF13473
Description Cupredoxin-like domain

Occurence in the database

PF13473 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1678 FBDBKF_11715 130551 130886 1 EfeO-type cupredoxin-like domain-containing protein Morganella morganii S1
1 group_1678 EHELCC_17635 28894 29229 1 EfeO-type cupredoxin-like domain-containing protein Morganella morganii S2
2 group_1678 NLDBIP_19305 4839 5174 1 EfeO-type cupredoxin-like domain-containing protein Morganella morganii S4
3 group_1678 LHKJJB_18075 28894 29229 1 EfeO-type cupredoxin-like domain-containing protein Morganella morganii S3
4 group_1678 HKOGLL_19005 12825 13160 -1 EfeO-type cupredoxin-like domain-containing protein Morganella morganii S5
5 group_1678 F4V73_RS07980 1664045 1664383 -1 cupredoxin domain-containing protein Morganella psychrotolerans
6 group_1678 PMI_RS00850 212542 212889 -1 cupredoxin domain-containing protein Proteus mirabilis HI4320