PF13413


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF13413, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF13413
Description Helix-turn-helix domain

Occurence in the database

PF13413 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_512 FBDBKF_01060 193193 194251 -1 rodZ cytoskeleton protein RodZ Morganella morganii S1
1 group_512 EHELCC_00485 114617 115675 1 rodZ cytoskeleton protein RodZ Morganella morganii S2
2 group_512 NLDBIP_02975 564461 565519 -1 rodZ cytoskeleton protein RodZ Morganella morganii S4
3 group_512 LHKJJB_04490 171702 172760 -1 rodZ cytoskeleton protein RodZ Morganella morganii S3
4 group_512 HKOGLL_02555 114822 115880 1 rodZ cytoskeleton protein RodZ Morganella morganii S5
5 group_512 F4V73_RS07135 1481624 1482595 -1 rodZ cytoskeleton protein RodZ Morganella psychrotolerans
6 group_512 PMI_RS09110 1983746 1984708 -1 rodZ cytoskeleton protein RodZ Proteus mirabilis HI4320