Homologs in group_512

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_01060 FBDBKF_01060 80.6 Morganella morganii S1 rodZ cytoskeleton protein RodZ
EHELCC_00485 EHELCC_00485 80.6 Morganella morganii S2 rodZ cytoskeleton protein RodZ
NLDBIP_02975 NLDBIP_02975 80.6 Morganella morganii S4 rodZ cytoskeleton protein RodZ
LHKJJB_04490 LHKJJB_04490 80.6 Morganella morganii S3 rodZ cytoskeleton protein RodZ
HKOGLL_02555 HKOGLL_02555 80.6 Morganella morganii S5 rodZ cytoskeleton protein RodZ
PMI_RS09110 PMI_RS09110 44.7 Proteus mirabilis HI4320 rodZ cytoskeleton protein RodZ

Distribution of the homologs in the orthogroup group_512

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_512

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
A4WD94 5.92e-86 265 42 7 336 3 rodZ Cytoskeleton protein RodZ Enterobacter sp. (strain 638)
Q8Z4P3 1.33e-85 263 43 6 322 3 rodZ Cytoskeleton protein RodZ Salmonella typhi
A8GHW6 6.78e-85 261 42 8 334 3 rodZ Cytoskeleton protein RodZ Serratia proteamaculans (strain 568)
C0PYM9 2.2e-84 260 42 7 331 3 rodZ Cytoskeleton protein RodZ Salmonella paratyphi C (strain RKS4594)
B4TD94 2.2e-84 260 42 7 331 3 rodZ Cytoskeleton protein RodZ Salmonella heidelberg (strain SL476)
Q57LI5 2.2e-84 260 42 7 331 3 rodZ Cytoskeleton protein RodZ Salmonella choleraesuis (strain SC-B67)
Q8ZN53 4.09e-84 260 42 7 331 3 rodZ Cytoskeleton protein RodZ Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
B5BAY4 4.09e-84 260 42 7 331 3 rodZ Cytoskeleton protein RodZ Salmonella paratyphi A (strain AKU_12601)
A9N200 4.09e-84 260 42 7 331 3 rodZ Cytoskeleton protein RodZ Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
Q5PNI3 4.09e-84 260 42 7 331 3 rodZ Cytoskeleton protein RodZ Salmonella paratyphi A (strain ATCC 9150 / SARB42)
B5F199 4.09e-84 260 42 7 331 3 rodZ Cytoskeleton protein RodZ Salmonella agona (strain SL483)
B5R583 6.73e-84 259 42 7 331 3 rodZ Cytoskeleton protein RodZ Salmonella enteritidis PT4 (strain P125109)
B5FR64 6.73e-84 259 42 7 331 3 rodZ Cytoskeleton protein RodZ Salmonella dublin (strain CT_02021853)
A1JKS1 7.14e-84 259 41 7 340 3 rodZ Cytoskeleton protein RodZ Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)
B4T0Q0 1.45e-83 258 42 7 333 3 rodZ Cytoskeleton protein RodZ Salmonella newport (strain SL254)
A9MHL4 1.6e-83 258 42 5 322 3 rodZ Cytoskeleton protein RodZ Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980)
B5RCZ3 6.15e-83 257 42 7 331 3 rodZ Cytoskeleton protein RodZ Salmonella gallinarum (strain 287/91 / NCTC 13346)
B5XNL4 6.46e-83 256 42 6 329 3 rodZ Cytoskeleton protein RodZ Klebsiella pneumoniae (strain 342)
Q3YZ36 9.75e-83 256 41 7 339 3 rodZ Cytoskeleton protein RodZ Shigella sonnei (strain Ss046)
Q83QK7 9.75e-83 256 41 7 339 3 rodZ Cytoskeleton protein RodZ Shigella flexneri
Q0T203 9.75e-83 256 41 7 339 3 rodZ Cytoskeleton protein RodZ Shigella flexneri serotype 5b (strain 8401)
B7MYF1 1.48e-82 256 42 5 331 3 rodZ Cytoskeleton protein RodZ Escherichia coli O81 (strain ED1a)
Q32D46 4.08e-82 255 41 7 339 3 rodZ Cytoskeleton protein RodZ Shigella dysenteriae serotype 1 (strain Sd197)
Q1R8L7 6.31e-82 254 41 5 331 3 rodZ Cytoskeleton protein RodZ Escherichia coli (strain UTI89 / UPEC)
A1AE54 6.31e-82 254 41 5 331 3 rodZ Cytoskeleton protein RodZ Escherichia coli O1:K1 / APEC
B7MI01 6.31e-82 254 41 5 331 3 rodZ Cytoskeleton protein RodZ Escherichia coli O45:K1 (strain S88 / ExPEC)
B7UGW2 6.31e-82 254 41 5 331 3 rodZ Cytoskeleton protein RodZ Escherichia coli O127:H6 (strain E2348/69 / EPEC)
A8AD70 6.5e-82 254 41 6 335 3 rodZ Cytoskeleton protein RodZ Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)
B7NRG6 6.73e-82 254 42 7 334 3 rodZ Cytoskeleton protein RodZ Escherichia coli O7:K1 (strain IAI39 / ExPEC)
A7MGV6 1.13e-81 254 40 7 332 3 rodZ Cytoskeleton protein RodZ Cronobacter sakazakii (strain ATCC BAA-894)
A6TCD5 1.78e-81 253 41 7 335 3 rodZ Cytoskeleton protein RodZ Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
B1LNH1 1.84e-81 253 42 7 334 3 rodZ Cytoskeleton protein RodZ Escherichia coli (strain SMS-3-5 / SECEC)
Q0TEW9 1.95e-81 253 41 5 331 3 rodZ Cytoskeleton protein RodZ Escherichia coli O6:K15:H31 (strain 536 / UPEC)
Q8FF56 4.07e-81 252 41 5 331 3 rodZ Cytoskeleton protein RodZ Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
B2VE88 5.83e-81 252 39 7 351 3 rodZ Cytoskeleton protein RodZ Erwinia tasmaniensis (strain DSM 17950 / CFBP 7177 / CIP 109463 / NCPPB 4357 / Et1/99)
B4TR96 9e-81 251 41 6 331 3 rodZ Cytoskeleton protein RodZ Salmonella schwarzengrund (strain CVM19633)
A4TMT8 9.81e-81 251 40 8 351 3 rodZ Cytoskeleton protein RodZ Yersinia pestis (strain Pestoides F)
Q1CK92 1.15e-80 251 40 8 351 3 rodZ Cytoskeleton protein RodZ Yersinia pestis bv. Antiqua (strain Nepal516)
A9R803 1.15e-80 251 40 8 351 3 rodZ Cytoskeleton protein RodZ Yersinia pestis bv. Antiqua (strain Angola)
Q7CJM7 1.15e-80 251 40 8 351 3 rodZ Cytoskeleton protein RodZ Yersinia pestis
Q1C5I7 1.15e-80 251 40 8 351 3 rodZ Cytoskeleton protein RodZ Yersinia pestis bv. Antiqua (strain Antiqua)
B7N6A4 2.22e-80 250 41 5 333 3 rodZ Cytoskeleton protein RodZ Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC)
B7M7M0 2.22e-80 250 41 5 333 3 rodZ Cytoskeleton protein RodZ Escherichia coli O8 (strain IAI1)
B7LDA8 2.22e-80 250 41 5 333 3 rodZ Cytoskeleton protein RodZ Escherichia coli (strain 55989 / EAEC)
B2TXU1 2.4e-80 250 41 5 333 3 rodZ Cytoskeleton protein RodZ Shigella boydii serotype 18 (strain CDC 3083-94 / BS512)
B6I588 2.4e-80 250 41 5 333 3 rodZ Cytoskeleton protein RodZ Escherichia coli (strain SE11)
B1IWE5 2.4e-80 250 41 5 333 3 rodZ Cytoskeleton protein RodZ Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks)
A8A322 2.4e-80 250 41 5 333 3 rodZ Cytoskeleton protein RodZ Escherichia coli O9:H4 (strain HS)
B5Z0Y5 2.53e-80 250 41 5 333 3 rodZ Cytoskeleton protein RodZ Escherichia coli O157:H7 (strain EC4115 / EHEC)
Q7ABM8 2.53e-80 250 41 5 333 3 rodZ Cytoskeleton protein RodZ Escherichia coli O157:H7
A7ZPV9 7.16e-80 249 41 5 333 3 rodZ Cytoskeleton protein RodZ Escherichia coli O139:H28 (strain E24377A / ETEC)
P27434 1.53e-79 248 41 5 333 1 rodZ Cytoskeleton protein RodZ Escherichia coli (strain K12)
B1XAZ1 1.53e-79 248 41 5 333 3 rodZ Cytoskeleton protein RodZ Escherichia coli (strain K12 / DH10B)
C4ZX91 1.53e-79 248 41 5 333 3 rodZ Cytoskeleton protein RodZ Escherichia coli (strain K12 / MC4100 / BW2952)
B7LKC2 1.05e-78 246 41 6 336 3 rodZ Cytoskeleton protein RodZ Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CCUG 18766 / IAM 14443 / JCM 21226 / LMG 7866 / NBRC 102419 / NCTC 12128 / CDC 0568-73)
Q667Z8 1.52e-78 246 38 6 359 3 rodZ Cytoskeleton protein RodZ Yersinia pseudotuberculosis serotype I (strain IP32953)
B2K9Q1 1.52e-78 246 38 6 359 3 rodZ Cytoskeleton protein RodZ Yersinia pseudotuberculosis serotype IB (strain PB1/+)
A7FFY8 3.13e-77 243 39 9 371 3 rodZ Cytoskeleton protein RodZ Yersinia pseudotuberculosis serotype O:1b (strain IP 31758)
B1JS04 7.47e-77 242 38 8 365 3 rodZ Cytoskeleton protein RodZ Yersinia pseudotuberculosis serotype O:3 (strain YPIII)
Q31XX4 2.09e-75 238 41 5 333 3 rodZ Cytoskeleton protein RodZ Shigella boydii serotype 4 (strain Sb227)
Q6D275 2.17e-71 227 39 4 332 3 rodZ Cytoskeleton protein RodZ Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672)
Q57065 1.12e-24 104 28 10 305 4 HI_0367 Uncharacterized protein HI_0367 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS07135
Feature type CDS
Gene rodZ
Product cytoskeleton protein RodZ
Location 1481624 - 1482595 (strand: -1)
Length 972 (nucleotides) / 323 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_512
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF13413 Helix-turn-helix domain
PF13464 RodZ C-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1426 Cell cycle control, cell division, chromosome partitioning (D) D Cytoskeletal protein RodZ, contains Xre-like HTH and DUF4115 domains

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K15539 cytoskeleton protein RodZ - -

Protein Sequence

MNNSQSQDNIQLSLGQFLTQRREQLQLSRETVADRLCLKLTTVREIEEDALKETNPTFIRGYVRTYAKLLQIPEAEIMPYLDKIAPAQMTKVQPMKSVSMGRQRKKREGWLMKFTWLVLLVVIALVGLWWWQQYQAQQADLRSLAQQNDVTVNPPAGAEHALPDNIQPPVQNTPPVESTPPVPAVSANTNTATQELSAATPQEQVVDSSKIVPLPGSNRIPPVVNRAAGSEGDSAAAVALTQNGLVLTFKNACWLEVSDNKGTKIFSGTKQKGDTLEFAGAEPYRLKIGAPASVDVQFKGQAIDMSRFIRANRVANLSVPKAE

Flanking regions ( +/- flanking 50bp)

AGCTGACTCCGCGCTTTCTCGTAACCAGAACTGCTTGTGTCCTGAAACTCATGAATAATTCGCAATCTCAAGATAATATTCAACTCTCTCTTGGTCAATTCTTAACACAACGTCGGGAACAACTTCAGTTATCACGGGAAACAGTAGCAGATAGGTTATGTCTTAAACTGACAACAGTGCGTGAAATTGAAGAAGATGCACTGAAAGAAACCAATCCGACCTTTATCCGTGGTTACGTCCGTACTTATGCAAAATTACTGCAAATTCCTGAAGCAGAAATTATGCCGTATCTCGACAAAATCGCACCGGCGCAGATGACGAAAGTCCAGCCGATGAAAAGTGTGTCTATGGGTCGGCAGCGCAAAAAACGCGAAGGCTGGCTGATGAAATTTACCTGGCTTGTGCTGCTGGTTGTTATTGCCCTTGTCGGGCTGTGGTGGTGGCAGCAATATCAGGCACAGCAGGCAGATCTCCGCTCTCTTGCACAGCAAAATGATGTAACGGTCAATCCACCGGCAGGTGCTGAGCATGCACTGCCTGACAATATTCAACCGCCGGTACAAAATACCCCGCCGGTTGAAAGTACCCCGCCGGTTCCGGCCGTATCTGCTAATACCAATACAGCCACACAGGAACTCTCTGCGGCAACCCCGCAGGAGCAGGTTGTTGACAGCAGTAAAATTGTGCCGTTACCGGGCAGTAATCGTATCCCGCCGGTTGTAAACCGTGCCGCCGGCAGTGAAGGTGATTCGGCTGCGGCTGTGGCGCTGACACAGAACGGACTGGTTCTGACATTTAAAAATGCCTGCTGGCTGGAAGTCTCGGACAATAAAGGCACAAAAATATTCAGTGGTACCAAACAGAAAGGCGATACTCTGGAATTTGCAGGGGCGGAACCTTATCGTCTGAAAATTGGCGCACCGGCTTCCGTGGATGTTCAGTTTAAAGGTCAGGCGATTGATATGAGCCGTTTTATCCGGGCTAACCGGGTCGCAAATCTGAGCGTACCAAAAGCAGAATAATAAAATTTTCTATCTGTAATTTTTACAATTAATTTAATTAACACAGCAAT