PF13404


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF13404, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF13404
Description AsnC-type helix-turn-helix domain

Occurence in the database

PF13404 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2061 FBDBKF_15440 14279 14740 1 asnC transcriptional regulator AsnC Morganella morganii S1
1 group_2061 EHELCC_15800 13579 14040 1 asnC transcriptional regulator AsnC Morganella morganii S2
2 group_2061 NLDBIP_16570 66623 67084 -1 asnC transcriptional regulator AsnC Morganella morganii S4
3 group_2061 LHKJJB_16235 13579 14040 1 asnC transcriptional regulator AsnC Morganella morganii S3
4 group_2061 HKOGLL_16005 13579 14040 1 asnC transcriptional regulator AsnC Morganella morganii S5
5 group_2061 F4V73_RS17705 182400 182861 -1 asnC transcriptional regulator AsnC Morganella psychrotolerans
6 group_2061 PMI_RS15120 3356899 3357360 1 asnC transcriptional regulator AsnC Proteus mirabilis HI4320