PF13275


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF13275, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF13275
Description S4 domain

Occurence in the database

PF13275 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_914 FBDBKF_04935 193856 194068 1 ybcJ ribosome-associated protein YbcJ Morganella morganii S1
1 group_914 EHELCC_06225 253313 253525 1 ybcJ ribosome-associated protein YbcJ Morganella morganii S2
2 group_914 NLDBIP_06545 294378 294590 1 ybcJ ribosome-associated protein YbcJ Morganella morganii S4
3 group_914 LHKJJB_03425 271902 272114 1 ybcJ ribosome-associated protein YbcJ Morganella morganii S3
4 group_914 HKOGLL_06900 193766 193978 1 ybcJ ribosome-associated protein YbcJ Morganella morganii S5
5 group_914 F4V73_RS16075 18571 18783 1 ybcJ ribosome-associated protein YbcJ Morganella psychrotolerans
6 group_914 PMI_RS10625 2336649 2336861 1 ybcJ ribosome-associated protein YbcJ Proteus mirabilis HI4320