Homologs in group_914

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_04935 FBDBKF_04935 68.6 Morganella morganii S1 ybcJ ribosome-associated protein YbcJ
EHELCC_06225 EHELCC_06225 68.6 Morganella morganii S2 ybcJ ribosome-associated protein YbcJ
NLDBIP_06545 NLDBIP_06545 68.6 Morganella morganii S4 ybcJ ribosome-associated protein YbcJ
LHKJJB_03425 LHKJJB_03425 68.6 Morganella morganii S3 ybcJ ribosome-associated protein YbcJ
HKOGLL_06900 HKOGLL_06900 68.6 Morganella morganii S5 ybcJ ribosome-associated protein YbcJ
F4V73_RS16075 F4V73_RS16075 64.3 Morganella psychrotolerans ybcJ ribosome-associated protein YbcJ

Distribution of the homologs in the orthogroup group_914

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_914

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AAS8 1.37e-25 92 66 0 68 3 ybcJ Uncharacterized protein YbcJ Shigella flexneri
P0AAS7 1.37e-25 92 66 0 68 1 ybcJ Putative RNA-binding protein YbcJ Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS10625
Feature type CDS
Gene ybcJ
Product ribosome-associated protein YbcJ
Location 2336649 - 2336861 (strand: 1)
Length 213 (nucleotides) / 70 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_914
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF13275 S4 domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2501 Translation, ribosomal structure and biogenesis (J) J Ribosome-associated protein YbcJ, S4-like RNA-binding protein

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K14761 ribosome-associated protein - -

Protein Sequence

METFQLDGHPYVELCDLLKLQGWTESGAAAKNIIAEGLVCVDGEVETRKRCKITAGKVVTLGEFAVTVSN

Flanking regions ( +/- flanking 50bp)

TGCAAGCCTGCGAAGAATATCACGATCCTGATATAGGAAATAATTAATCAATGGAAACATTTCAATTAGATGGTCACCCCTATGTAGAACTGTGTGATCTATTAAAACTCCAAGGCTGGACAGAAAGCGGAGCCGCTGCAAAAAATATTATTGCTGAAGGCCTCGTTTGCGTTGATGGTGAAGTAGAAACACGTAAACGCTGTAAAATTACTGCCGGTAAAGTCGTCACACTCGGTGAGTTTGCTGTCACTGTCAGCAACTAGTTCAGCTAATCATACTCGTTACTCAAGCGTTACTCTTTAGTAACGCTTTT