Homologs in group_914

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_04935 FBDBKF_04935 92.9 Morganella morganii S1 ybcJ ribosome-associated protein YbcJ
EHELCC_06225 EHELCC_06225 92.9 Morganella morganii S2 ybcJ ribosome-associated protein YbcJ
NLDBIP_06545 NLDBIP_06545 92.9 Morganella morganii S4 ybcJ ribosome-associated protein YbcJ
LHKJJB_03425 LHKJJB_03425 92.9 Morganella morganii S3 ybcJ ribosome-associated protein YbcJ
HKOGLL_06900 HKOGLL_06900 92.9 Morganella morganii S5 ybcJ ribosome-associated protein YbcJ
PMI_RS10625 PMI_RS10625 64.3 Proteus mirabilis HI4320 ybcJ ribosome-associated protein YbcJ

Distribution of the homologs in the orthogroup group_914

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_914

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AAS8 2.63e-29 101 69 0 68 3 ybcJ Uncharacterized protein YbcJ Shigella flexneri
P0AAS7 2.63e-29 101 69 0 68 1 ybcJ Putative RNA-binding protein YbcJ Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS16075
Feature type CDS
Gene ybcJ
Product ribosome-associated protein YbcJ
Location 18571 - 18783 (strand: 1)
Length 213 (nucleotides) / 70 (amino acids)

Contig

Accession term accessions NZ_VXKB01000006 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 212134 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_914
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF13275 S4 domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2501 Translation, ribosomal structure and biogenesis (J) J Ribosome-associated protein YbcJ, S4-like RNA-binding protein

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K14761 ribosome-associated protein - -

Protein Sequence

MAIFNLEGHPHVELCDLLKIQGWADSGAAAKQFIADGQVTVDGETETRKRCKIIAGKTVEFAGQQVKVAE

Flanking regions ( +/- flanking 50bp)

CAGAACACATTACAGGCTTGTGAAGAATTTCACGATAAGGACGAATAACCATGGCTATTTTTAATCTCGAAGGGCACCCGCACGTTGAATTATGTGATTTACTCAAAATTCAGGGCTGGGCTGACAGTGGTGCGGCAGCAAAACAGTTTATTGCCGATGGTCAGGTAACAGTCGACGGCGAAACCGAAACCCGTAAACGCTGTAAAATCATAGCAGGAAAAACCGTTGAATTTGCCGGACAACAGGTAAAAGTGGCTGAATAATATCTGTCTGCGAATAAACCAGAGCATTGTCTCTGGTTTTTTTTATCCGA