PF13245


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF13245, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF13245
Description AAA domain

Occurence in the database

PF13245 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1082 FBDBKF_06150 51738 53570 -1 recD exodeoxyribonuclease V subunit alpha Morganella morganii S1
1 group_1082 EHELCC_09195 52310 54142 -1 recD exodeoxyribonuclease V subunit alpha Morganella morganii S2
2 group_1082 NLDBIP_09575 52310 54142 -1 recD exodeoxyribonuclease V subunit alpha Morganella morganii S4
3 group_1082 LHKJJB_08180 163096 164928 1 recD exodeoxyribonuclease V subunit alpha Morganella morganii S3
4 group_1082 HKOGLL_07730 163096 164928 1 recD exodeoxyribonuclease V subunit alpha Morganella morganii S5
5 group_1082 F4V73_RS15765 160576 162411 1 recD exodeoxyribonuclease V subunit alpha Morganella psychrotolerans
6 group_1082 PMI_RS11415 2509816 2511732 -1 recD exodeoxyribonuclease V subunit alpha Proteus mirabilis HI4320