PF13185


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF13185, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 6 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF13185
Description GAF domain

Occurence in the database

PF13185 is associated with 6 different proteins (see tab "Protein list" and "Profile")
The 6 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_585 FBDBKF_01695 28114 28611 1 msrC GAF domain-containing protein, putative methionine-R-sulfoxide reductase Morganella morganii S1
1 group_585 EHELCC_02165 415934 416431 1 msrC GAF domain-containing protein, putative methionine-R-sulfoxide reductase Morganella morganii S2
2 group_585 NLDBIP_01295 263705 264202 -1 msrC GAF domain-containing protein, putative methionine-R-sulfoxide reductase Morganella morganii S4
3 group_585 LHKJJB_00740 128483 128980 1 msrC GAF domain-containing protein, putative methionine-R-sulfoxide reductase Morganella morganii S3
4 group_585 HKOGLL_00780 133994 134491 1 msrC GAF domain-containing protein, putative methionine-R-sulfoxide reductase Morganella morganii S5
5 group_1411 PMI_RS17100 3760581 3762284 -1 sensor histidine kinase Proteus mirabilis HI4320