PF13181


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF13181, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 11 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF13181
Description Tetratricopeptide repeat

Occurence in the database

PF13181 is associated with 11 different proteins (see tab "Protein list" and "Profile")
The 11 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1409 FBDBKF_08700 121484 122371 1 nlpI lipoprotein NlpI Morganella morganii S1
1 group_312 FBDBKF_09290 91117 91581 -1 tadD Flp pilus assembly protein TadD, contains TPR repeats Morganella morganii S1
2 group_312 EHELCC_10120 54523 54987 1 tadD Flp pilus assembly protein TadD, contains TPR repeats Morganella morganii S2
3 group_1409 EHELCC_12825 41354 42241 -1 nlpI lipoprotein NlpI Morganella morganii S2
4 group_312 NLDBIP_10465 32794 33258 1 tadD Flp pilus assembly protein TadD, contains TPR repeats Morganella morganii S4
5 group_1409 NLDBIP_13165 41354 42241 -1 nlpI lipoprotein NlpI Morganella morganii S4
6 group_312 LHKJJB_10890 158270 158734 -1 tadD Flp pilus assembly protein TadD, contains TPR repeats Morganella morganii S3
7 group_1409 LHKJJB_13390 120202 121089 1 nlpI lipoprotein NlpI Morganella morganii S3
8 group_1409 HKOGLL_11640 41354 42241 -1 nlpI lipoprotein NlpI Morganella morganii S5
9 group_312 HKOGLL_13950 91571 92035 -1 tadD Flp pilus assembly protein TadD, contains TPR repeats Morganella morganii S5
10 group_1409 F4V73_RS09920 88668 89555 1 nlpI lipoprotein NlpI Morganella psychrotolerans