PF13180


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF13180, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 13 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF13180
Description PDZ domain

Occurence in the database

PF13180 is associated with 13 different proteins (see tab "Protein list" and "Profile")
The 13 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_720 FBDBKF_03145 30824 32218 1 degQ serine endoprotease DegQ Morganella morganii S1
1 group_722 FBDBKF_03180 39871 40929 1 degS outer membrane-stress sensor serine endopeptidase DegS Morganella morganii S1
2 group_722 EHELCC_07355 206174 207232 -1 degS outer membrane-stress sensor serine endopeptidase DegS Morganella morganii S2
3 group_720 EHELCC_07390 214885 216279 -1 degQ serine endoprotease DegQ Morganella morganii S2
4 group_722 NLDBIP_07680 206047 207105 -1 degS outer membrane-stress sensor serine endopeptidase DegS Morganella morganii S4
5 group_720 NLDBIP_07715 214758 216152 -1 degQ serine endoprotease DegQ Morganella morganii S4
6 group_722 LHKJJB_07215 169793 170851 -1 degS outer membrane-stress sensor serine endopeptidase DegS Morganella morganii S3
7 group_720 LHKJJB_07250 178504 179898 -1 degQ serine endoprotease DegQ Morganella morganii S3
8 group_720 HKOGLL_03680 53489 54883 1 degQ serine endoprotease DegQ Morganella morganii S5
9 group_722 HKOGLL_03715 62536 63594 1 degS outer membrane-stress sensor serine endopeptidase DegS Morganella morganii S5
10 group_722 F4V73_RS11740 496202 497287 -1 degS outer membrane-stress sensor serine endopeptidase DegS Morganella psychrotolerans
11 group_720 F4V73_RS11775 504976 506370 -1 degQ serine endoprotease DegQ Morganella psychrotolerans
12 group_722 PMI_RS18235 4000014 4001084 -1 degS outer membrane-stress sensor serine endopeptidase DegS Proteus mirabilis HI4320