PF12805


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF12805, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF12805
Description FUSC-like inner membrane protein yccS

Occurence in the database

PF12805 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_295 FBDBKF_07355 154968 157184 -1 yccC Uncharacterized membrane protein YccC Morganella morganii S1
1 group_295 EHELCC_03615 29002 31218 1 yccC Uncharacterized membrane protein YccC Morganella morganii S2
2 group_295 NLDBIP_03615 28798 31014 1 yccC Uncharacterized membrane protein YccC Morganella morganii S4
3 group_295 LHKJJB_09445 28912 31128 1 yccC Uncharacterized membrane protein YccC Morganella morganii S3
4 group_295 HKOGLL_09530 159924 162140 -1 yccC Uncharacterized membrane protein YccC Morganella morganii S5
5 group_295 F4V73_RS01540 343423 345648 -1 yccS YccS family putative transporter Morganella psychrotolerans
6 group_295 PMI_RS03870 876298 878472 -1 yccS YccS family putative transporter Proteus mirabilis HI4320